Literature DB >> 14681446

Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster.

Reed J Kelso1, Michael Buszczak, Ana T Quiñones, Claudia Castiblanco, Stacy Mazzalupo, Lynn Cooley.   

Abstract

Flytrap is a web-enabled relational database of transposable element insertions in Drosophila melanogaster. A green fluorescent protein (GFP) artificial exon carried by a transposable P-element is mobilized and inserted into a host gene intron creating a GFP fusion protein. The sequence of the tagged gene is determined by sequencing inverse-PCR products derived from genomic DNA. Flytrap contains two principle data types: micrographs of protein localization and a cellular component ontology, based on rules derived from the Gene Ontology consortium (http://www.geneontology.org), describing protein localization. Flytrap also has links to gene information contained in Flybase (http:// flybase.bio.indiana.edu). The system is designed to accept submissions of micrographs and descriptions from any type of tissue (e.g. wing imaginal disk, ovary) and at any stage of development. Insertion lines can be searched using a number of queries, including Berkeley Drosophila Genome Project (BDGP) numbers and protein localization. In addition, Flytrap provides online order forms linked to each insertion line so that users may request any line generated from this project. Flytrap may be accessed from the homepage at http://flytrap.med. yale.edu.

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Year:  2004        PMID: 14681446      PMCID: PMC308749          DOI: 10.1093/nar/gkh014

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  A protein trap strategy to detect GFP-tagged proteins expressed from their endogenous loci in Drosophila.

Authors:  X Morin; R Daneman; M Zavortink; W Chia
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  TRIPLES: a database of gene function in Saccharomyces cerevisiae.

Authors:  A Kumar; K H Cheung; P Ross-Macdonald; P S Coelho; P Miller; M Snyder
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  The TRIPLES database: a community resource for yeast molecular biology.

Authors:  Anuj Kumar; Kei-Hoi Cheung; Nick Tosches; Peter Masiar; Yang Liu; Perry Miller; Michael Snyder
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  The FlyBase database of the Drosophila genome projects and community literature.

Authors: 
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes.

Authors:  A C Spradling; D Stern; A Beaton; E J Rhem; T Laverty; N Mozden; S Misra; G M Rubin
Journal:  Genetics       Date:  1999-09       Impact factor: 4.562

  6 in total
  88 in total

1.  Intercellular protein movement in syncytial Drosophila follicle cells.

Authors:  Stephanie J Airoldi; Peter F McLean; Yuko Shimada; Lynn Cooley
Journal:  J Cell Sci       Date:  2011-12-01       Impact factor: 5.285

2.  Fluorescent fusion protein knockout mediated by anti-GFP nanobody.

Authors:  Emmanuel Caussinus; Oguz Kanca; Markus Affolter
Journal:  Nat Struct Mol Biol       Date:  2011-12-11       Impact factor: 15.369

3.  Regulation of cyclin A localization downstream of Par-1 function is critical for the centrosome orientation checkpoint in Drosophila male germline stem cells.

Authors:  Hebao Yuan; C-Y Ason Chiang; Jun Cheng; Viktoria Salzmann; Yukiko M Yamashita
Journal:  Dev Biol       Date:  2011-10-15       Impact factor: 3.582

4.  Sm proteins specify germ cell fate by facilitating oskar mRNA localization.

Authors:  Graydon B Gonsalvez; T K Rajendra; Ying Wen; Kavita Praveen; A Gregory Matera
Journal:  Development       Date:  2010-07       Impact factor: 6.868

5.  Exploring strategies for protein trapping in Drosophila.

Authors:  Ana T Quiñones-Coello; Lisa N Petrella; Kathleen Ayers; Anthony Melillo; Stacy Mazzalupo; Andrew M Hudson; Shu Wang; Claudia Castiblanco; Michael Buszczak; Roger A Hoskins; Lynn Cooley
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

Review 6.  Resources for functional genomics studies in Drosophila melanogaster.

Authors:  Stephanie E Mohr; Yanhui Hu; Kevin Kim; Benjamin E Housden; Norbert Perrimon
Journal:  Genetics       Date:  2014-03-20       Impact factor: 4.562

7.  A hormonal cue promotes timely follicle cell migration by modulating transcription profiles.

Authors:  Lathiena Manning; Jinal Sheth; Stacey Bridges; Afsoon Saadin; Kamsi Odinammadu; Deborah Andrew; Susan Spencer; Denise Montell; Michelle Starz-Gaiano
Journal:  Mech Dev       Date:  2017-06-10       Impact factor: 1.882

8.  Imaging transcription dynamics at endogenous genes in living Drosophila tissues.

Authors:  Jie Yao; Katie L Zobeck; John T Lis; Watt W Webb
Journal:  Methods       Date:  2008-06-27       Impact factor: 3.608

9.  Fluorescent labeling of Drosophila heart structures.

Authors:  Nakissa N Alayari; Georg Vogler; Ouarda Taghli-Lamallem; Karen Ocorr; Rolf Bodmer; Anthony Cammarato
Journal:  J Vis Exp       Date:  2009-10-13       Impact factor: 1.355

10.  The utility of stage-specific mid-to-late Drosophila follicle isolation.

Authors:  Andrew J Spracklen; Tina L Tootle
Journal:  J Vis Exp       Date:  2013-12-02       Impact factor: 1.355

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