Literature DB >> 10984461

Opportunities at the intersection of bioinformatics and health informatics: a case study.

P L Miller1.   

Abstract

This paper provides a "viewpoint discussion" based on a presentation made to the 2000 Symposium of the American College of Medical Informatics. It discusses potential opportunities for researchers in health informatics to become involved in the rapidly growing field of bioinformatics, using the activities of the Yale Center for Medical Informatics as a case study. One set of opportunities occurs where bioinformatics research itself intersects with the clinical world. Examples include the correlations between individual genetic variation with clinical risk factors, disease presentation, and differential response to treatment; and the implications of including genetic test results in the patient record, which raises clinical decision support issues as well as legal and ethical issues. A second set of opportunities occurs where bioinformatics research can benefit from the technologic expertise and approaches that informaticians have used extensively in the clinical arena. Examples include database organization and knowledge representation, data mining, and modeling and simulation. Microarray technology is discussed as a specific potential area for collaboration. Related questions concern how best to establish collaborations with bioscientists so that the interests and needs of both sets of researchers can be met in a synergistic fashion, and the most appropriate home for bioinformatics in an academic medical center.

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Mesh:

Year:  2000        PMID: 10984461      PMCID: PMC79037          DOI: 10.1136/jamia.2000.0070431

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  11 in total

1.  Neuronal database integration: the Senselab EAV data model.

Authors:  L Marenco; P Nadkarni; E Skoufos; G Shepherd; P Miller
Journal:  Proc AMIA Symp       Date:  1999

2.  ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.

Authors:  K H Cheung; M V Osier; J R Kidd; A J Pakstis; P L Miller; K K Kidd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Organization of heterogeneous scientific data using the EAV/CR representation.

Authors:  P M Nadkarni; L Marenco; R Chen; E Skoufos; G Shepherd; P Miller
Journal:  J Am Med Inform Assoc       Date:  1999 Nov-Dec       Impact factor: 4.497

4.  TRIPLES: a database of gene function in Saccharomyces cerevisiae.

Authors:  A Kumar; K H Cheung; P Ross-Macdonald; P S Coelho; P Miller; M Snyder
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  Olfactory Receptor Database: a database of the largest eukaryotic gene family.

Authors:  E Skoufos; M D Healy; M S Singer; P M Nadkarni; P L Miller; G M Shepherd
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

Review 6.  The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data.

Authors:  G M Shepherd; J S Mirsky; M D Healy; M S Singer; E Skoufos; M S Hines; P M Nadkarni; P L Miller
Journal:  Trends Neurosci       Date:  1998-11       Impact factor: 13.837

Review 7.  Gene expression informatics--it's all in your mine.

Authors:  D E Bassett; M B Eisen; M S Boguski
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

8.  Managing attribute--value clinical trials data using the ACT/DB client-server database system.

Authors:  P M Nadkarni; C Brandt; S Frawley; F G Sayward; R Einbinder; D Zelterman; L Schacter; P L Miller
Journal:  J Am Med Inform Assoc       Date:  1998 Mar-Apr       Impact factor: 4.497

9.  Internet-based support for bioscience research: a collaborative genome center for human chromosome 12.

Authors:  P L Miller; P M Nadkarni; K K Kidd; K Cheung; D C Ward; A Banks; P Bray-Ward; L Cupelli; V Herdman; I Marondel; K Montgomery; B Renault; S J Yoon; K S Krauter; R Kucherlapati
Journal:  J Am Med Inform Assoc       Date:  1995 Nov-Dec       Impact factor: 4.497

10.  CECIL: a database for storing and retrieving clinical and molecular information on patients with Alport syndrome.

Authors:  P M Nadkarni; S T Reeders; J Zhou
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1993
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  7 in total

1.  The challenge of bridging between disciplines.

Authors:  W W Stead
Journal:  J Am Med Inform Assoc       Date:  2001 Jan-Feb       Impact factor: 4.497

2.  Bioinformatics and medical informatics: collaborations on the road to genomic medicine?

Authors:  Victor Maojo; Casimir A Kulikowski
Journal:  J Am Med Inform Assoc       Date:  2003-08-04       Impact factor: 4.497

3.  Training multidisciplinary biomedical informatics students: three years of experience.

Authors:  Erik M van Mulligen; Montserrat Cases; Kristina Hettne; Eva Molero; Marc Weeber; Kevin A Robertson; Baldomero Oliva; Guillermo de la Calle; Victor Maojo
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

4.  A curricula-based comparison of biomedical and health informatics programs in the USA.

Authors:  Julia Kampov-Polevoi; Bradley M Hemminger
Journal:  J Am Med Inform Assoc       Date:  2011-02-02       Impact factor: 4.497

Review 5.  The role of the pathologist as tissue refiner and data miner: the impact of functional genomics on the modern pathology laboratory and the critical roles of pathology informatics and bioinformatics.

Authors:  M J Becich
Journal:  Mol Diagn       Date:  2000-12

6.  A framework and mechanistically focused, in silico method for enabling rational translational research.

Authors:  C Anthony Hunt; Sergio Baranzini; Michael A Matthay; Sunwoo Park
Journal:  Summit Transl Bioinform       Date:  2008-03-01

7.  New approach to generating insights for aging research based on literature mining and knowledge integration.

Authors:  Yeondae Kwon; Yukikazu Natori; Masaru Tanokura
Journal:  PLoS One       Date:  2017-08-17       Impact factor: 3.240

  7 in total

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