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Literature DB >> 11503515

EBI databases and services.

Abstract

The EMBL Outstation-European Bioinformatics Institute (EBI) is a center for research and services in bioinformatics. It serves researchers in molecular biology, genetics, medicine, and agriculture from academia, and the agricultural, biotechnology, chemical, and pharmaceutical industries. The Institute manages and makes available databases of biological data including nucleic acid, protein sequences, and macromolecular structures. It provides to this community bioinformatics services relevant to molecular biology free of charge over the Internet. Some of these databases and services are described in this review.

Mesh：

Year: 2001 PMID： 11503515 DOI： 10.1385/MB:18:3:199

Source DB: PubMed Journal: Mol Biotechnol ISSN： 1073-6085 Impact factor: 2.695

17 in total

1. The EMBL nucleotide sequence database.

Authors: W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. GenBank.

Authors: D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

3. InterPro--an integrated documentation resource for protein families, domains and functional sites.

Authors: R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal: Bioinformatics Date: 2000-12 Impact factor: 6.937

4. Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Authors: R Apweiler; M Biswas; W Fleischmann; A Kanapin; Y Karavidopoulou; P Kersey; E V Kriventseva; V Mittard; N Mulder; I Phan; E Zdobnov
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

5. CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.

Authors: E V Kriventseva; W Fleischmann; E M Zdobnov; R Apweiler
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

6. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

7. Rapid and sensitive sequence comparison with FASTP and FASTA.

Authors: W R Pearson
Journal: Methods Enzymol Date: 1990 Impact factor: 1.600

8. Local alignment statistics.

Authors: S F Altschul; W Gish
Journal: Methods Enzymol Date: 1996 Impact factor: 1.600

9. The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors: F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal: J Mol Biol Date: 1977-05-25 Impact factor: 5.469

10. Improved tools for biological sequence comparison.

Authors: W R Pearson; D J Lipman
Journal: Proc Natl Acad Sci U S A Date: 1988-04 Impact factor: 11.205

2 in total

1. Protein-x of hepatitis B virus in interaction with CCAAT/enhancer-binding protein α (C/EBPα)--an in silico analysis approach.

Authors: Ashraf Mohamadkhani; Parisa Shahnazari; Zarrin Minuchehr; Armin Madadkar-Sobhani; Mahmoud Jeddi Tehrani; Ferdous Rastgar Jazii; Hossein Poustchi
Journal: Theor Biol Med Model Date: 2011-10-28 Impact factor: 2.432

2. The Rat Genome Database (RGD): developments towards a phenome database.

Authors: Norberto de la Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R Gopinath; Glenn Harris; Aubrey Hughes; Yuan Ji; Weihong Jin; Dawei Li; Jedidiah Mathis; Natalya Nenasheva; Jeff Nie; Rajni Nigam; Victoria Petri; Dorothy Reilly; Weiye Wang; Wenhua Wu; Angela Zuniga-Meyer; Lan Zhao; Anne Kwitek; Peter Tonellato; Howard Jacob
Journal: Nucleic Acids Res Date: 2005-01-01 Impact factor: 16.971

2 in total