Literature DB >> 10570157

Promoter-specific hypoacetylation of X-inactivated genes.

S L Gilbert1, P A Sharp.   

Abstract

The histone H4 acetylation status of the active X (Xa) and inactive X (Xi) chromosomes was investigated at the level of individual genes. A moderate level of acetylation was observed along the lengths of genes on both the Xi and Xa, regardless of their X inactivation status. However, this moderate level of acetylation was modified specifically in promoter regions. Transcriptionally active genes showed elevated levels of acetylation at their promoters on both the Xi and Xa. In contrast, promoters of X-inactivated genes were markedly hypoacetylated, which coincided with the methylation of adjacent CG dinucleotides. This promoter-specific hypoacetylation may be a key component of an X inactivation machinery that operates at the level of individual genes.

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Year:  1999        PMID: 10570157      PMCID: PMC24149          DOI: 10.1073/pnas.96.24.13825

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Chromatin structure analysis of the mouse Xist locus.

Authors:  V McCabe; E J Formstone; L P O'Neill; B M Turner; N Brockdorff
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  A developmental switch in H4 acetylation upstream of Xist plays a role in X chromosome inactivation.

Authors:  L P O'Neill; A M Keohane; J S Lavender; V McCabe; E Heard; P Avner; N Brockdorff; B M Turner
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

3.  Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex.

Authors:  X Nan; H H Ng; C A Johnson; C D Laherty; B M Turner; R N Eisenman; A Bird
Journal:  Nature       Date:  1998-05-28       Impact factor: 49.962

4.  Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription.

Authors:  P L Jones; G J Veenstra; P A Wade; D Vermaak; S U Kass; N Landsberger; J Strouboulis; A P Wolffe
Journal:  Nat Genet       Date:  1998-06       Impact factor: 38.330

5.  Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals.

Authors:  C Costanzi; J R Pehrson
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

6.  Differential underacetylation of histones H2A, H3 and H4 on the inactive X chromosome in human female cells.

Authors:  N Belyaev; A M Keohane; B M Turner
Journal:  Hum Genet       Date:  1996-05       Impact factor: 4.132

7.  Requirement for Xist in X chromosome inactivation.

Authors:  G D Penny; G F Kay; S A Sheardown; S Rastan; N Brockdorff
Journal:  Nature       Date:  1996-01-11       Impact factor: 49.962

8.  A proposed path by which genes common to mammalian X and Y chromosomes evolve to become X inactivated.

Authors:  K Jegalian; D C Page
Journal:  Nature       Date:  1998-08-20       Impact factor: 49.962

9.  The murine Xe169 gene escapes X-inactivation like its human homologue.

Authors:  J Wu; E C Salido; P H Yen; T K Mohandas; H H Heng; L C Tsui; J Park; V M Chapman; L J Shapiro
Journal:  Nat Genet       Date:  1994-08       Impact factor: 38.330

10.  A novel X gene with a widely transcribed Y-linked homologue escapes X-inactivation in mouse and human.

Authors:  A I Agulnik; M J Mitchell; M G Mattei; G Borsani; P A Avner; J L Lerner; C E Bishop
Journal:  Hum Mol Genet       Date:  1994-06       Impact factor: 6.150

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  22 in total

1.  Histone variant macroH2A contains two distinct macrochromatin domains capable of directing macroH2A to the inactive X chromosome.

Authors:  B P Chadwick; C M Valley; H F Willard
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

2.  Identification and punctate nuclear localization of a novel noncoding RNA, Ks-1, from the honeybee brain.

Authors:  Miyuki Sawata; Daisuke Yoshino; Hideaki Takeuchi; Azusa Kamikouchi; Kazuaki Ohashi; Takeo Kubo
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

3.  Allele-specific underacetylation of histone H4 downstream from promoters is associated with X-inactivation in human cells.

Authors:  Harris Morrison; Peter Jeppesen
Journal:  Chromosome Res       Date:  2002       Impact factor: 5.239

4.  Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage.

Authors:  María Gómez; Neil Brockdorff
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-22       Impact factor: 11.205

5.  Familial molar tissues due to mutations in the inflammatory gene, NALP7, have normal postzygotic DNA methylation.

Authors:  Ugljesa Djuric; Osman El-Maarri; Barbara Lamb; Rork Kuick; Muheiddine Seoud; Philippe Coullin; Johannes Oldenburg; Samir Hanash; Rima Slim
Journal:  Hum Genet       Date:  2006-07-28       Impact factor: 4.132

6.  Difference between random and imprinted X inactivation in common voles.

Authors:  Elena V Dementyeva; Alexander I Shevchenko; Olga V Anopriyenko; Nina A Mazurok; Eugeny A Elisaphenko; Tatyana B Nesterova; Neil Brockdorff; Suren M Zakian
Journal:  Chromosoma       Date:  2010-05-15       Impact factor: 4.316

7.  X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils.

Authors:  Yukio Yasukochi; Osamu Maruyama; Milind C Mahajan; Carolyn Padden; Ghia M Euskirchen; Vincent Schulz; Hideki Hirakawa; Satoru Kuhara; Xing-Hua Pan; Peter E Newburger; Michael Snyder; Sherman M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

8.  Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells.

Authors:  Shiro Koizume; Ken Tachibana; Takao Sekiya; Setsuo Hirohashi; Masahiko Shiraishi
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

9.  The methylation of the TSC2 promoter underlies the abnormal growth of TSC2 angiomyolipoma-derived smooth muscle cells.

Authors:  Elena Lesma; Silvia Maria Sirchia; Silvia Ancona; Stephana Carelli; Silvano Bosari; Filippo Ghelma; Emanuele Montanari; Anna Maria Di Giulio; Alfredo Gorio
Journal:  Am J Pathol       Date:  2009-05-14       Impact factor: 4.307

10.  Synergism between DNA methylation and macroH2A1 occupancy in epigenetic silencing of the tumor suppressor gene p16(CDKN2A).

Authors:  Michal Barzily-Rokni; Nathalie Friedman; Shulamit Ron-Bigger; Sara Isaac; Dan Michlin; Amir Eden
Journal:  Nucleic Acids Res       Date:  2010-10-28       Impact factor: 16.971

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