Literature DB >> 16597822

pK values of the ionizable groups of proteins.

Richard L Thurlkill1, Gerald R Grimsley, J Martin Scholtz, C Nick Pace.   

Abstract

We have used potentiometric titrations to measure the pK values of the ionizable groups of proteins in alanine pentapeptides with appropriately blocked termini. These pentapeptides provide an improved model for the pK values of the ionizable groups in proteins. Our pK values determined in 0.1 M KCl at 25 degrees C are: 3.67+/-0.03 (alpha-carboxyl), 3.67+/-0.04 (Asp), 4.25+/-0.05 (Glu), 6.54+/-0.04 (His), 8.00+/-0.03 (alpha-amino), 8.55+/-0.03 (Cys), 9.84+/-0.11 (Tyr), and 10.40+/-0.08 (Lys). The pK values of some groups differ from the Nozaki and Tanford (N & T) pK values often used in the literature: Asp (3.67 this work vs. 4.0 N & T); His (6.54 this work vs. 6.3 N & T); alpha-amino (8.00 this work vs. 7.5 N & T); Cys (8.55 this work vs. 9.5 N & T); and Tyr (9.84 this work vs. 9.6 N & T). Our pK values will be useful to those who study pK perturbations in folded and unfolded proteins, and to those who use theory to gain a better understanding of the factors that determine the pK values of the ionizable groups of proteins.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16597822      PMCID: PMC2242523          DOI: 10.1110/ps.051840806

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  38 in total

1.  Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability.

Authors:  A H Elcock
Journal:  J Mol Biol       Date:  1999-12-10       Impact factor: 5.469

2.  Charge-charge interactions influence the denatured state ensemble and contribute to protein stability.

Authors:  C N Pace; R W Alston; K L Shaw
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

Review 3.  What are the dielectric "constants" of proteins and how to validate electrostatic models?

Authors:  C N Schutz; A Warshel
Journal:  Proteins       Date:  2001-09-01

4.  The effect of net charge on the solubility, activity, and stability of ribonuclease Sa.

Authors:  K L Shaw; G R Grimsley; G I Yakovlev; A A Makarov; C N Pace
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

5.  Relative helix-forming tendencies of nonpolar amino acids.

Authors:  S Padmanabhan; S Marqusee; T Ridgeway; T M Laue; R L Baldwin
Journal:  Nature       Date:  1990-03-15       Impact factor: 49.962

Review 6.  Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.

Authors:  Thomas K Harris; George J Turner
Journal:  IUBMB Life       Date:  2002-02       Impact factor: 3.885

7.  High apparent dielectric constants in the interior of a protein reflect water penetration.

Authors:  J J Dwyer; A G Gittis; D A Karp; E E Lattman; D S Spencer; W E Stites; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

8.  Experimental pK(a) values of buried residues: analysis with continuum methods and role of water penetration.

Authors:  Carolyn A Fitch; Daniel A Karp; Kelly K Lee; Wesley E Stites; Eaton E Lattman; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

9.  Empirical relationships between protein structure and carboxyl pKa values in proteins.

Authors:  William R Forsyth; Jan M Antosiewicz; Andrew D Robertson
Journal:  Proteins       Date:  2002-08-01

10.  Variability in the pKa of histidine side-chains correlates with burial within proteins.

Authors:  Stephen P Edgcomb; Kenneth P Murphy
Journal:  Proteins       Date:  2002-10-01
View more
  99 in total

1.  Molecular basis of the light-driven switching of the photochromic fluorescent protein Padron.

Authors:  Tanja Brakemann; Gert Weber; Martin Andresen; Gerrit Groenhof; Andre C Stiel; Simon Trowitzsch; Christian Eggeling; Helmut Grubmüller; Stefan W Hell; Markus C Wahl; Stefan Jakobs
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

2.  pK(a) values for the unfolded state under native conditions explain the pH-dependent stability of PGB1.

Authors:  Stina Lindman; Mikael C Bauer; Mikael Lund; Carl Diehl; Frans A A Mulder; Mikael Akke; Sara Linse
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Electrostatics of cysteine residues in proteins: parameterization and validation of a simple model.

Authors:  Freddie R Salsbury; Leslie B Poole; Jacquelyn S Fetrow
Journal:  Proteins       Date:  2012-08-21

4.  Cyclable Condensation and Hierarchical Assembly of Metastable Reflectin Proteins, the Drivers of Tunable Biophotonics.

Authors:  Robert Levenson; Colton Bracken; Nicole Bush; Daniel E Morse
Journal:  J Biol Chem       Date:  2015-12-30       Impact factor: 5.157

5.  Intramolecular diffusion controls aggregation of the PAPf39 peptide.

Authors:  Kinshuk R Srivastava; Kinsley C French; Franco O Tzul; George I Makhatadze; Lisa J Lapidus
Journal:  Biophys Chem       Date:  2016-06-29       Impact factor: 2.352

6.  Predicting extreme pKa shifts in staphylococcal nuclease mutants with constant pH molecular dynamics.

Authors:  Evan J Arthur; Joseph D Yesselman; Charles L Brooks
Journal:  Proteins       Date:  2011-10-15

7.  Molecular basis of coiled-coil formation.

Authors:  Michel O Steinmetz; Ilian Jelesarov; William M Matousek; Srinivas Honnappa; Wolfgang Jahnke; John H Missimer; Sabine Frank; Andrei T Alexandrescu; Richard A Kammerer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

8.  Local and global anatomy of antibody-protein antigen recognition.

Authors:  Meryl Wang; David Zhu; Jianwei Zhu; Ruth Nussinov; Buyong Ma
Journal:  J Mol Recognit       Date:  2017-12-08       Impact factor: 2.137

9.  Lysine acetylation can generate highly charged enzymes with increased resistance toward irreversible inactivation.

Authors:  Bryan F Shaw; Gregory F Schneider; Basar Bilgiçer; George K Kaufman; John M Neveu; William S Lane; Julian P Whitelegge; George M Whitesides
Journal:  Protein Sci       Date:  2008-05-01       Impact factor: 6.725

10.  Protonation of individual histidine residues is not required for the pH-dependent entry of west nile virus: evaluation of the "histidine switch" hypothesis.

Authors:  Steevenson Nelson; Subhajit Poddar; Tsai-Yu Lin; Theodore C Pierson
Journal:  J Virol       Date:  2009-09-23       Impact factor: 5.103

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.