Literature DB >> 10518512

Go-ing for the prediction of protein folding mechanisms.

S Takada1.   

Abstract

Mesh：

Year:  1999        PMID： 10518512      PMCID： PMC33792          DOI： 10.1073/pnas.96.21.11698

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  20 in total

1.  A theoretical search for folding/unfolding nuclei in three-dimensional protein structures.

Authors:  O V Galzitskaya; A V Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Authors:  E Alm; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

3.  Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble.

Authors:  B A Shoemaker; J Wang; P G Wolynes
Journal:  J Mol Biol       Date:  1999-04-02       Impact factor: 5.469

Review 4.  Designing potential energy functions for protein folding.

Authors:  M H Hao; H A Scheraga
Journal:  Curr Opin Struct Biol       Date:  1999-04       Impact factor: 6.809

5.  Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution.

Authors:  Y Duan; P A Kollman
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

6.  Self-consistently optimized energy functions for protein structure prediction by molecular dynamics.

Authors:  K K Koretke; Z Luthey-Schulten; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

7.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

8.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

9.  Protein design: a perspective from simple tractable models

Authors: 
Journal:  Fold Des       Date:  1998

10.  Non-native alpha-helical intermediate in the refolding of beta-lactoglobulin, a predominantly beta-sheet protein.

Authors:  D Hamada; S Segawa; Y Goto
Journal:  Nat Struct Biol       Date:  1996-10
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  41 in total

1.  What is the role of non-native intermediates of beta-lactoglobulin in protein folding?

Authors:  G Chikenji; M Kikuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Analysis of multiple folding routes of proteins by a coarse-grained dynamics model.

Authors:  B Erman
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Buffed energy landscapes: another solution to the kinetic paradoxes of protein folding.

Authors:  Steven S Plotkin; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

4.  Fast protein folding kinetics.

Authors:  Jack Schonbrun; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

5.  The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation.

Authors:  Jun Shimada; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-06       Impact factor: 11.205

6.  Universality classes in folding times of proteins.

Authors:  Marek Cieplak; Trinh Xuan Hoang
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

7.  Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition.

Authors:  Emanuele Paci; Michele Vendruscolo; Martin Karplus
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

8.  Simulation, experiment, and evolution: understanding nucleation in protein S6 folding.

Authors:  Isaac A Hubner; Mikael Oliveberg; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-18       Impact factor: 11.205

9.  Database-derived potentials dependent on protein size for in silico folding and design.

Authors:  Yves Dehouck; Dimitri Gilis; Marianne Rooman
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

10.  Exploring the energy landscapes of protein folding simulations with Bayesian computation.

Authors:  Nikolas S Burkoff; Csilla Várnai; Stephen A Wells; David L Wild
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033
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