Literature DB >> 8900472

Application of neural networks to flow cytometry data analysis and real-time cell classification.

D S Frankel1, S L Frankel, B J Binder, R F Vogt.   

Abstract

Conventional analysis of flow cytometric data requires that population identification be performed graphically after a sample has been run using two-parameter scatter plots. As more parameters are measured, the number of possible two-parameter plots increases geometrically, making data analysis increasingly cumbersome. Artificial Neural Systems (ANS), also known as neural networks, are a powerful and convenient method for overcoming this data bottleneck. ANS "learn" to make classifications using all of the measured parameters simultaneously. Mathematical models and programming expertise are not required. ANS are inherently parallel so that high processing speed can be achieved. Because ANS are nonlinear, curved class boundaries and other nonlinearities can emerge naturally. Here, we present biomedical and oceanographic data to demonstrate the useful properties of neural networks for processing and analyzing flow cytometry data. We show that ANS are equally useful for human leukocytes and marine plankton data. They can easily accommodate nonlinear variations in data, detect subtle changes in measurements, interpolate and classify cells they were not trained on, and analyze multiparameter cell data in real time. Real-time classification of a mixture of six cyanobacteria strains was achieved with an average accuracy of 98%.

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Year:  1996        PMID: 8900472     DOI: 10.1002/(SICI)1097-0320(19960401)23:4<290::AID-CYTO5>3.0.CO;2-L

Source DB:  PubMed          Journal:  Cytometry        ISSN: 0196-4763


  6 in total

1.  Identification of phytoplankton from flow cytometry data by using radial basis function neural networks.

Authors:  M F Wilkins; L Boddy; C W Morris; R R Jonker
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

Review 2.  Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses.

Authors:  H M Davey; D B Kell
Journal:  Microbiol Rev       Date:  1996-12

3.  A neural network model for cell classification based on single-cell biomechanical properties.

Authors:  Eric M Darling; Farshid Guilak
Journal:  Tissue Eng Part A       Date:  2008-09       Impact factor: 3.845

Review 4.  Artificial Neural Networks as Decision Support Tools in Cytopathology: Past, Present, and Future.

Authors:  Abraham Pouliakis; Efrossyni Karakitsou; Niki Margari; Panagiotis Bountris; Maria Haritou; John Panayiotides; Dimitrios Koutsouris; Petros Karakitsos
Journal:  Biomed Eng Comput Biol       Date:  2016-02-18

5.  Consistent quantitative gene product expression: #1. Automated identification of regenerating bone marrow cell populations using support vector machines.

Authors:  Andrew P Voigt; Lisa Eidenschink Brodersen; Laura Pardo; Soheil Meshinchi; Michael R Loken
Journal:  Cytometry A       Date:  2016-07-14       Impact factor: 4.355

6.  A survey of flow cytometry data analysis methods.

Authors:  Ali Bashashati; Ryan R Brinkman
Journal:  Adv Bioinformatics       Date:  2009-12-06
  6 in total

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