Literature DB >> 10504239

Backbone dynamics of azurin in solution: slow conformational change associated with deprotonation of histidine 35.

A P Kalverda1, M Ubbink, G Gilardi, S S Wijmenga, A Crawford, L J Jeuken, G W Canters.   

Abstract

15N relaxation measurements have been performed on the type Iota blue copper protein azurin from Pseudomonas aeruginosa. The relaxation times show that one loop (residues 103-108) and one turn (residues 74-77) display fast internal motions. The rest of the protein is rigid with an average order parameter S(2) of 0.85 +/- 0. 05. The copper binding site shows the same degree of rigidity even though is it composed of several loops and lies outside the beta-sheet sandwich. Substantial exchange broadening was found for a number of residues surrounding the side chain of His-35. The average exchange rate has been determined from NMR exchange spectroscopy experiments and is 45 +/- 6 s(-)(1) at 41 degrees C. The exchange broadening is caused by the protonation/deprotonation equilibrium of His-35. The NMR results indicate that the two structures of azurin observed by X-ray diffraction of crystals at pH 5.5 and 9.0 [Nar, H., Messerschmidt, A., Huber, R., Van de Kamp, M., Canters, G. W. (1991) J. Mol. Biol. 221, 765-772] are present in solution and that they interconvert slowly.

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Year:  1999        PMID: 10504239     DOI: 10.1021/bi990624l

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  The structure and dynamics in solution of Cu(I) pseudoazurin from Paracoccus pantotrophus.

Authors:  G S Thompson; Y C Leung; S J Ferguson; S E Radford; C Redfield
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

2.  NMR detection of multiple transitions to low-populated states in azurin.

Authors:  Dmitry M Korzhnev; B Göran Karlsson; Vladislav Yu Orekhov; Martin Billeter
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

3.  Flexibility of the metal-binding region in apo-cupredoxins.

Authors:  María-Eugenia Zaballa; Luciano A Abriata; Antonio Donaire; Alejandro J Vila
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

4.  Electron Tunneling through Pseudomonas aeruginosa Azurins on SAM Gold Electrodes.

Authors:  Keiko Yokoyama; Brian S Leigh; Yuling Sheng; Katsumi Niki; Nobuhumi Nakamura; Hiroyuki Ohno; Jay R Winkler; Harry B Gray; John H Richards
Journal:  Inorganica Chim Acta       Date:  2008-03-03       Impact factor: 2.545

5.  (13)C-(1)H NMR relaxation and fluorescence anisotropy decay study of tyrosine dynamics in motilin.

Authors:  Peter Damberg; Jüri Jarvet; Peter Allard; Ulo Mets; Rudolf Rigler; Astrid Gräslund
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

6.  HullRad: Fast Calculations of Folded and Disordered Protein and Nucleic Acid Hydrodynamic Properties.

Authors:  Patrick J Fleming; Karen G Fleming
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

7.  An NMR view of the unfolding process of rusticyanin: Structural elements that maintain the architecture of a beta-barrel metalloprotein.

Authors:  Luis A Alcaraz; Beatriz Jiménez; José María Moratal; Antonio Donaire
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

8.  Active site modeling in copper azurin molecular dynamics simulations.

Authors:  Bruno Rizzuti; Marcel Swart; Luigi Sportelli; Rita Guzzi
Journal:  J Mol Model       Date:  2003-12-23       Impact factor: 1.810

  8 in total

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