Literature DB >> 12414713

(13)C-(1)H NMR relaxation and fluorescence anisotropy decay study of tyrosine dynamics in motilin.

Peter Damberg1, Jüri Jarvet, Peter Allard, Ulo Mets, Rudolf Rigler, Astrid Gräslund.   

Abstract

Tyrosine ring dynamics of the gastrointestinal hormone motilin was studied using two independent physical methods: fluorescence polarization anisotropy decay and NMR relaxation. Motilin, a 22-residue peptide, was selectively (13)C labeled in the ring epsilon-carbons of the single tyrosine residue. To eliminate effects of differences in peptide concentration, the same motilin sample was used in both experiments. NMR relaxation rates of the tyrosine ring C(epsilon)-H(epsilon) vectors, measured at four magnetic field strengths (9.4, 11.7, 14.1, and 18.8 Tesla) were used to map the spectral density function. When the data were analyzed using dynamic models with the same number of components, the dynamic parameters from NMR and fluorescence are in excellent agreement. However, the estimated rotational correlation times depend on the choice of dynamic model. The correlation times estimated from the two-component model-free approach and the three-component models were significantly different (1.7 ns and 2.2 ns, respectively). Various earlier studies of protein dynamics by NMR and fluorescence were compared. The rotational correlation times estimated by NMR for samples with high protein concentration were on average 18% longer for folded monomeric proteins than the corresponding times estimated by fluorescence polarization anisotropy decay, after correction for differences in viscosity due to temperature and D(2)O/H(2)O ratio.

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Year:  2002        PMID: 12414713      PMCID: PMC1302365          DOI: 10.1016/S0006-3495(02)75290-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

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2.  Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

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3.  A carbon-13 spin lattice relaxation study of alumichrome at 25.1 MHz and 90.5 MHz.

Authors:  M Llinás; W Meier; K Wüthrich
Journal:  Biochim Biophys Acta       Date:  1977-05-27

4.  Correlation between internal motion and emission kinetics of tryptophan residues in proteins.

Authors:  T Kouyama; K Kinosita; A Ikegami
Journal:  Eur J Biochem       Date:  1989-07-01

5.  Dynamics of the peptide hormone motilin studied by time resolved fluorescence spectroscopy.

Authors:  B M Backlund; T Kulinski; R Rigler; A Gräslund
Journal:  Eur Biophys J       Date:  1995       Impact factor: 1.733

6.  Internal motion of lysozyme studied by time-resolved fluorescence depolarization of tryptophan residues.

Authors:  E Nishimoto; S Yamashita; A G Szabo; T Imoto
Journal:  Biochemistry       Date:  1998-04-21       Impact factor: 3.162

7.  Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

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Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

8.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  13C NMR relaxation studies of backbone and side chain motion of the catalytic tyrosine residue in free and steroid-bound delta 5-3-ketosteroid isomerase.

Authors:  Q Zhao; C Abeygunawardana; A S Mildvan
Journal:  Biochemistry       Date:  1996-02-06       Impact factor: 3.162

10.  Local mobility within villin 14T probed via heteronuclear relaxation measurements and a reduced spectral density mapping.

Authors:  M A Markus; K T Dayie; P Matsudaira; G Wagner
Journal:  Biochemistry       Date:  1996-02-13       Impact factor: 3.162

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  2 in total

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Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

2.  Maximum entropy reconstruction of joint phi, psi-distribution with a coil-library prior: the backbone conformation of the peptide hormone motilin in aqueous solution from phi and psi-dependent J-couplings.

Authors:  Tariq Massad; Jüri Jarvet; Risto Tanner; Katrin Tomson; Julia Smirnova; Peep Palumaa; Mariko Sugai; Toshiyuki Kohno; Kalju Vanatalu; Peter Damberg
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  2 in total

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