Literature DB >> 15987900

An NMR view of the unfolding process of rusticyanin: Structural elements that maintain the architecture of a beta-barrel metalloprotein.

Luis A Alcaraz1, Beatriz Jiménez, José María Moratal, Antonio Donaire.   

Abstract

The unfolding process of the blue copper protein rusticyanin (Rc) as well as its dynamic and D(2)O/H(2)O exchange properties in an incipient unfolded state have been studied by heteronuclear NMR spectroscopy. Titrations of apo, Cu(I), and Cu(II)Rc with guanidinium chloride (GdmCl) show that the copper ion stabilizes the folded species and remains bound in the completely unfolded state. The oxidized state of the copper ion is more efficient than the reduced form in this respect. The long loop of Rc (where the first ligand of the copper ion is located) is one of the most mobile domains of the protein. This region has no defined secondary structure elements and is prone to exchange its amide protons. In contrast, the last loop (including a short alpha-helix) and the last beta-strand (where the other three ligands of the metal ion are located) form the most rigid domain of the protein. The results taken as a whole suggest that the first ligand detaches from the metal ion when the protein unfolds, while the other three ligands remain bound to it. The implications of these findings for the biological folding process of Rc are also discussed.

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Year:  2005        PMID: 15987900      PMCID: PMC2253362          DOI: 10.1110/ps.051337505

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  60 in total

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Authors:  H Jane Dyson; Peter E Wright
Journal:  Adv Protein Chem       Date:  2002

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Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

3.  Unifying features in protein-folding mechanisms.

Authors:  Stefano Gianni; Nicholas R Guydosh; Faaizah Khan; Teresa D Caldas; Ugo Mayor; George W N White; Mari L DeMarco; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

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Authors:  C Romero; J M Moratal; A Donaire
Journal:  FEBS Lett       Date:  1998-11-27       Impact factor: 4.124

5.  ePHOGSY experiments on a paramagnetic protein: location of the catalytic water molecule in the heme crevice of the oxidized form of horse heart cytochrome c.

Authors:  I Bertini; C Dalvit; J G Huber; C Luchinat; M Piccioli
Journal:  FEBS Lett       Date:  1997-09-22       Impact factor: 4.124

6.  Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

Authors:  D S Garrett; Y J Seok; A Peterkofsky; G M Clore; A M Gronenborn
Journal:  Biochemistry       Date:  1997-04-15       Impact factor: 3.162

7.  Backbone dynamics of the N-terminal domain of the HIV-1 capsid protein and comparison with the G94D mutant conferring cyclosporin resistance/dependence.

Authors:  R Campos-Olivas; M F Summers
Journal:  Biochemistry       Date:  1999-08-10       Impact factor: 3.162

8.  Effects of folding on metalloprotein active sites.

Authors:  J R Winkler; P Wittung-Stafshede; J Leckner; B G Malmström; H B Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

Review 9.  Rack-induced bonding in blue-copper proteins.

Authors:  B G Malmström
Journal:  Eur J Biochem       Date:  1994-08-01

10.  Methionine-121 coordination determines metal specificity in unfolded Pseudomonas aeruginosa azurin.

Authors:  Jessica Marks; Irina Pozdnyakova; Jesse Guidry; Pernilla Wittung-Stafshede
Journal:  J Biol Inorg Chem       Date:  2004-02-03       Impact factor: 3.358

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  3 in total

1.  Thermostability of proteins: role of metal binding and pH on the stability of the dinuclear CuA site of Thermus thermophilus.

Authors:  Agnieszka Sujak; Nusrat J M Sanghamitra; Oliver Maneg; Bernd Ludwig; Shyamalava Mazumdar
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

2.  The removal of a disulfide bridge in CotA-laccase changes the slower motion dynamics involved in copper binding but has no effect on the thermodynamic stability.

Authors:  André T Fernandes; Manuela M Pereira; Catarina S Silva; Peter F Lindley; Isabel Bento; Eduardo Pinho Melo; Lígia O Martins
Journal:  J Biol Inorg Chem       Date:  2011-03-03       Impact factor: 3.358

3.  Folding and unfolding in the blue copper protein rusticyanin: role of the oxidation state.

Authors:  Luis A Alcaraz; Javier Gómez; Pablo Ramírez; Juan J Calvente; Rafael Andreu; Antonio Donaire
Journal:  Bioinorg Chem Appl       Date:  2007       Impact factor: 7.778

  3 in total

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