Literature DB >> 10472627

The fidelity of template-directed oligonucleotide ligation and the inevitability of polymerase function.

K D James1, A D Ellington.   

Abstract

The first living systems may have employed template-directed oligonucleotide ligation for replication. The utility of oligonucleotide ligation as a mechanism for the origin and evolution of life is in part dependent on its fidelity. We have devised a method for evaluating ligation fidelity in which ligation substrates are selected from random sequence libraries. The fidelities of chemical and enzymatic ligation are compared under a variety of conditions. While reaction conditions can be found that promote high fidelity copying, departure from these conditions leads to error-prone copying. In particular, ligation reactions with shorter oligonucleotide substrates are less efficient but more faithful. These results support a model for origins in which there was selective pressure for template-directed oligonucleotide ligation to be gradually supplanted by mononucleotide polymerization.

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Year:  1999        PMID: 10472627     DOI: 10.1023/a:1006544611320

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  29 in total

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Journal:  Nature       Date:  1992-07-09       Impact factor: 49.962

Review 2.  On the origin of RNA splicing and introns.

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Journal:  Cell       Date:  1985-09       Impact factor: 41.582

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Authors:  P C Sabeti; P J Unrau; D P Bartel
Journal:  Chem Biol       Date:  1997-10

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Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

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Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

6.  Surprising fidelity of template-directed chemical ligation of oligonucleotides.

Authors:  K D James; A D Ellington
Journal:  Chem Biol       Date:  1997-08

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Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

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Authors:  C Böhler; P E Nielsen; L E Orgel
Journal:  Nature       Date:  1995-08-17       Impact factor: 49.962

9.  Information transfer from peptide nucleic acids to RNA by template-directed syntheses.

Authors:  J G Schmidt; P E Nielsen; L E Orgel
Journal:  Nucleic Acids Res       Date:  1997-12-01       Impact factor: 16.971

10.  The fidelity of template-directed oligonucleotide ligation and its relevance to DNA computation.

Authors:  K D James; A R Boles; D Henckel; A D Ellington
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

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Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

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Authors:  Michael P Robertson; Gerald F Joyce
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8.  Dynamic assembly of primers on nucleic acid templates.

Authors:  Nicole A Leal; Makoto Sukeda; Steven A Benner
Journal:  Nucleic Acids Res       Date:  2006-09-08       Impact factor: 16.971

9.  Nonenzymatic copying of RNA templates containing all four letters is catalyzed by activated oligonucleotides.

Authors:  Noam Prywes; J Craig Blain; Francesca Del Frate; Jack W Szostak
Journal:  Elife       Date:  2016-06-28       Impact factor: 8.140

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Authors:  Ginestra Bianconi; Kun Zhao; Irene A Chen; Martin A Nowak
Journal:  PLoS Comput Biol       Date:  2013-05-09       Impact factor: 4.475

  10 in total

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