Literature DB >> 10386886

Simple sequence is abundant in eukaryotic proteins.

G B Golding1.   

Abstract

All proteins of Saccharomyces cerevisiae have been compared to determine how frequently segments from one protein are present in other proteins. Proteins that are recently evolutionarily related were excluded. The most frequently present protein segments are long, tandem repetitions of a single amino acid. For some of these segments, up to 14% of all proteins in the genome were found to have similar peptides within them. These peptide segments may not be functional protein domains. Although they are the most common shared feature of yeast proteins, their ubiquity and simplicity argue that their probable function may be to simply serve as spacers between other protein motifs.

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Year:  1999        PMID: 10386886      PMCID: PMC2144344          DOI: 10.1110/ps.8.6.1358

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  26 in total

1.  How big is the universe of exons?

Authors:  R L Dorit; L Schoenbach; W Gilbert
Journal:  Science       Date:  1990-12-07       Impact factor: 47.728

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Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
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Authors:  W Gilbert; S J de Souza; M Long
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

4.  opa: a novel family of transcribed repeats shared by the Notch locus and other developmentally regulated loci in D. melanogaster.

Authors:  K A Wharton; B Yedvobnick; V G Finnerty; S Artavanis-Tsakonas
Journal:  Cell       Date:  1985-01       Impact factor: 41.582

5.  A nerve growth factor-induced gene encodes a possible transcriptional regulatory factor.

Authors:  J Milbrandt
Journal:  Science       Date:  1987-11-06       Impact factor: 47.728

6.  Early genes that were oligomeric repeats generated a number of divergent domains on their own.

Authors:  S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

7.  Why genes in pieces?

Authors:  W Gilbert
Journal:  Nature       Date:  1978-02-09       Impact factor: 49.962

8.  Nucleotide sequences of Dictyostelium discoideum developmentally regulated cDNAs rich in (AAC) imply proteins that contain clusters of asparagine, glutamine, or threonine.

Authors:  D R Shaw; H Richter; R Giorda; T Ohmachi; H L Ennis
Journal:  Mol Gen Genet       Date:  1989-09

9.  DNA sequences homologous to the Drosophila opa repeat are present in murine mRNAs that are differentially expressed in fetuses and adult tissues.

Authors:  D Duboule; M Haenlin; B Galliot; E Mohier
Journal:  Mol Cell Biol       Date:  1987-05       Impact factor: 4.272

10.  The yeast ADR6 gene encodes homopolymeric amino acid sequences and a potential metal-binding domain.

Authors:  P J O'Hara; H Horowitz; G Eichinger; E T Young
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

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  17 in total

1.  Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications.

Authors:  M V Katti; R Sami-Subbu; P K Ranjekar; V S Gupta
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

2.  Neurological proteins are not enriched for repetitive sequences.

Authors:  Melanie A Huntley; G Brian Golding
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

3.  Effect of low-complexity regions on protein structure determination.

Authors:  Ryan M Bannen; Craig A Bingman; George N Phillips
Journal:  J Struct Funct Genomics       Date:  2008-02-27

4.  Genome-wide evidence for selection acting on single amino acid repeats.

Authors:  Wilfried Haerty; G Brian Golding
Journal:  Genome Res       Date:  2010-01-07       Impact factor: 9.043

5.  The Octatricopeptide Repeat Protein Raa8 Is Required for Chloroplast trans Splicing.

Authors:  Christina Marx; Christiane Wünsch; Ulrich Kück
Journal:  Eukaryot Cell       Date:  2015-07-24

6.  Low-complexity regions in Plasmodium falciparum proteins.

Authors:  E Pizzi; C Frontali
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

7.  Comparative genomics reveals long, evolutionarily conserved, low-complexity islands in yeast proteins.

Authors:  Philip A Romov; Fubin Li; Peter N Lipke; Susan L Epstein; Wei-Gang Qiu
Journal:  J Mol Evol       Date:  2006-08-21       Impact factor: 2.395

8.  Genome-wide comparative analysis of simple sequence coding repeats among 25 insect species.

Authors:  Susanta K Behura; David W Severson
Journal:  Gene       Date:  2012-05-23       Impact factor: 3.688

9.  Dissecting the role of low-complexity regions in the evolution of vertebrate proteins.

Authors:  Núria Radó-Trilla; Mmar Albà
Journal:  BMC Evol Biol       Date:  2012-08-24       Impact factor: 3.260

10.  Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains.

Authors:  Vladimir Espinosa Angarica; Salvador Ventura; Javier Sancho
Journal:  BMC Genomics       Date:  2013-05-10       Impact factor: 3.969

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