Literature DB >> 10329156

Characterization of transient intermediates in lysozyme folding with time-resolved small-angle X-ray scattering.

D J Segel1, A Bachmann, J Hofrichter, K O Hodgson, S Doniach, T Kiefhaber.   

Abstract

We have used synchrotron radiation, together with stopped-flow and continuous-flow mixing techniques to monitor refolding of lysozyme at pH 5.2. From data measured at times which range from 14 ms to two seconds, we can monitor changes in the size, the shape and the pair distribution function of the polypeptide chain during the folding process. Comparison of the results with the properties of native and GdmCl-unfolded lysozyme shows that a major chain collapse occurs in the dead-time of mixing. During this process about 50 % of the change in radius of gyration between the unfolded protein and the native state occurs and the polypeptide chain adopts a globular shape. Time-resolved fluorescence spectra of this collapsed state suggest that the hydrophobic side-chains are still highly solvent accessible. A subsequently formed intermediate with helical structure in the alpha-domain is nearly identical in size and shape with native lysozyme and has a solvent-inaccessible hydrophobic core. Despite its native-like properties, this intermediate is only slightly more stable (DeltaG0=-4 kJ/mol) than the collapsed state and still much less stable than native lysozyme (DeltaDeltaG0=36 kJ/mol) at 20 degrees C. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10329156     DOI: 10.1006/jmbi.1999.2703

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  33 in total

1.  The speed limit for protein folding measured by triplet-triplet energy transfer.

Authors:  O Bieri; J Wirz; B Hellrung; M Schutkowski; M Drewello; T Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  An amino acid code for protein folding.

Authors:  J Rumbley; L Hoang; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

3.  Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.

Authors:  L Pollack; M W Tate; N C Darnton; J B Knight; S M Gruner; W A Eaton; R H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

4.  New aspects of the alpha-helix to beta-sheet transition in stretched hard alpha-keratin fibers.

Authors:  L Kreplak; J Doucet; P Dumas; F Briki
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

5.  A non-native alpha-helix is formed in the beta-sheet region of the molten globule state of canine milk lysozyme.

Authors:  Masahiro Watanabe; Yoshihiro Kobashigawa; Tomoyasu Aizawa; Makoto Demura; Katsutoshi Nitta
Journal:  Protein J       Date:  2004-07       Impact factor: 2.371

6.  Pressure denaturation of staphylococcal nuclease studied by neutron small-angle scattering and molecular simulation.

Authors:  Amit Paliwal; Dilipkumar Asthagiri; Dobrin P Bossev; Michael E Paulaitis
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

7.  High-pressure SAXS study of folded and unfolded ensembles of proteins.

Authors:  Martin A Schroer; Michael Paulus; Christoph Jeworrek; Christina Krywka; Saskia Schmacke; Yong Zhai; D C Florian Wieland; Christoph J Sahle; Michael Chimenti; Catherine A Royer; Bertrand Garcia-Moreno; Metin Tolan; Roland Winter
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

8.  Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state.

Authors:  Tae Yeon Yoo; Steve P Meisburger; James Hinshaw; Lois Pollack; Gilad Haran; Tobin R Sosnick; Kevin Plaxco
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

9.  Specific collapse followed by slow hydrogen-bond formation of beta-sheet in the folding of single-chain monellin.

Authors:  Tetsunari Kimura; Takanori Uzawa; Koichiro Ishimori; Isao Morishima; Satoshi Takahashi; Takashi Konno; Shuji Akiyama; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-14       Impact factor: 11.205

10.  End-to-end distance distributions and intrachain diffusion constants in unfolded polypeptide chains indicate intramolecular hydrogen bond formation.

Authors:  Andreas Möglich; Karin Joder; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-07       Impact factor: 11.205

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