Literature DB >> 15328889

A non-native alpha-helix is formed in the beta-sheet region of the molten globule state of canine milk lysozyme.

Masahiro Watanabe1, Yoshihiro Kobashigawa, Tomoyasu Aizawa, Makoto Demura, Katsutoshi Nitta.   

Abstract

The native and the molten globule states (N and MG states, respectively) of canine milk lysozyme (CML) were examined by CD spectroscopy and AGADIR algorithm, a helix-coil transition program. It revealed that the helical content of the MG state was higher than that of the N-state, suggesting that non-native alpha-helix is formed in the MG state of CML. Using AGADIR, it indicated the possibility of alpha-helix formation in the third beta-strand region in the MG state. To investigate this possibility, we designed a mutant, Q58P, in which the helical propensity of the MG state was significantly decreased around the third beta-strand region. It appeared that the absolute ellipticity value at 222 nm of the mutant in the MG state was smaller than that of the wild-type protein. It could be assumed that the non-native alpha-helix is formed around the third beta-strand region of wild-type CML in the MG state.

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Year:  2004        PMID: 15328889     DOI: 10.1023/b:jopc.0000032653.30096.41

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  48 in total

1.  Expression of a synthetic gene encoding canine milk lysozyme in Escherichia coli and characterization of the expressed protein.

Authors:  T Koshiba; T Hayashi; I Miwako; I Kumagai; T Ikura; K Kawano; K Nitta; K Kuwajima
Journal:  Protein Eng       Date:  1999-05

2.  Exploration of partially unfolded states of human alpha-lactalbumin by molecular dynamics simulation.

Authors:  E Paci; L J Smith; C M Dobson; M Karplus
Journal:  J Mol Biol       Date:  2001-02-16       Impact factor: 5.469

3.  Protein engineering as a strategy to avoid formation of amyloid fibrils.

Authors:  V Villegas; J Zurdo; V V Filimonov; F X Avilés; C M Dobson; L Serrano
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

4.  Effect of hydrostatic pressure on unfolding of alpha-lactalbumin: volumetric equivalence of the molten globule and unfolded state.

Authors:  Y Kobashigawa; M Sakurai; K Nitta
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme.

Authors:  D M Rothwarf; H A Scheraga
Journal:  Biochemistry       Date:  1996-10-29       Impact factor: 3.162

6.  Equilibrium and kinetics of the folding of equine lysozyme studied by circular dichroism spectroscopy.

Authors:  M Mizuguchi; M Arai; Y Ke; K Nitta; K Kuwajima
Journal:  J Mol Biol       Date:  1998       Impact factor: 5.469

7.  Structural characterisation and comparison of the native and A-states of equine lysozyme.

Authors:  L A Morozova-Roche; C C Arico-Muendel; D T Haynie; V I Emelyanenko; H Van Dael; C M Dobson
Journal:  J Mol Biol       Date:  1997-05-23       Impact factor: 5.469

8.  Following protein folding in real time using NMR spectroscopy.

Authors:  J Balbach; V Forge; N A van Nuland; S L Winder; P J Hore; C M Dobson
Journal:  Nat Struct Biol       Date:  1995-10

9.  alpha-->beta transition of beta-lactoglobulin as evidenced by heteronuclear NMR.

Authors:  K Kuwata; M Hoshino; S Era; C A Batt; Y Goto
Journal:  J Mol Biol       Date:  1998-11-06       Impact factor: 5.469

10.  Comparison of MD simulations and NMR experiments for hen lysozyme. Analysis of local fluctuations, cooperative motions, and global changes.

Authors:  L J Smith; A E Mark; C M Dobson; W F van Gunsteren
Journal:  Biochemistry       Date:  1995-08-29       Impact factor: 3.162

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  3 in total

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Authors:  Bahram Pooreydy Golaki; Saeed Aminzadeh; Ali Asghar Karkhane; Bagher Yakhchali; Parisa Farrokh; Ferdous Rastgar Jazii; Mohammadsadegh Nadimifar
Journal:  Protein J       Date:  2015-08       Impact factor: 2.371

2.  NMR analysis of partially folded states and persistent structure in the alpha subunit of tryptophan synthase: implications for the equilibrium folding mechanism of a 29-kDa TIM barrel protein.

Authors:  Ramakrishna Vadrevu; Ying Wu; C Robert Matthews
Journal:  J Mol Biol       Date:  2007-11-13       Impact factor: 5.469

3.  Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.

Authors:  Leonardo Vazquez; Luis Mauricio Trambaioli da Rocha E Lima; Marcius da Silva Almeida
Journal:  PLoS One       Date:  2017-07-27       Impact factor: 3.240

  3 in total

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