Literature DB >> 10220396

Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities.

P Luo1, R L Baldwin.   

Abstract

We report an enthalpic factor involved in determining helix propensities of nonpolar amino acids. Thermal unfolding curves of the five 13-residue peptides, Ac-KA4XA4KGY-NH2 (X = Ala, Leu, Ile, Val, Gly), have been measured by using CD in water/trifluoroethanol (TFE) mixtures. The peptide helix contents show that the rank order of helix propensities changes with temperature: although Ala has the highest helix propensity at 0 degrees C in all TFE concentrations, it is lower than Leu, Ile, and Val at 50 degrees C in 20% TFE. This change is attributed to shielding by nonpolar side chains of the interaction between water and polar groups in the helix backbone for the following reasons. (i) Helix content is directly related to helix propensity for these designed peptides because side-chain-side-chain interactions are absent. (ii) The change in rank order with temperature is enthalpic in origin: in water, the apparent enthalpy of helix formation calculated from the thermal unfolding curves varies widely among the five peptides and has the same rank order as the helix propensities at 0 degrees C. The rank order does not result from burial of nonpolar surface area because the calculated heat capacity change (DeltaCp) on helix formation is opposite in sign from the expected DeltaCp. (iii) A nonpolar side chain can exclude water from interacting with helix polar groups, according to calculations of water-accessible surface area, and the polar interaction between water and peptide polar groups is entirely enthalpic, as shown by amide transfer data.

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Year:  1999        PMID: 10220396      PMCID: PMC21794          DOI: 10.1073/pnas.96.9.4930

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  Is protein folding hierarchic? I. Local structure and peptide folding.

Authors:  R L Baldwin; G D Rose
Journal:  Trends Biochem Sci       Date:  1999-01       Impact factor: 13.807

2.  Solvents, interfaces and protein structure.

Authors:  F M Richards; T Richmond
Journal:  Ciba Found Symp       Date:  1977

3.  Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to water.

Authors:  P Luo; R L Baldwin
Journal:  Biochemistry       Date:  1997-07-08       Impact factor: 3.162

4.  Temperature, stability, and the hydrophobic interaction.

Authors:  J A Schellman
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

5.  A direct comparison of helix propensity in proteins and peptides.

Authors:  J K Myers; C N Pace; J M Scholtz
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-01       Impact factor: 11.205

6.  Hydrophobic solvation in aqueous trifluoroethanol solution.

Authors:  M J Bodkin; J M Goodfellow
Journal:  Biopolymers       Date:  1996-07       Impact factor: 2.505

7.  Urea effects on protein stability: hydrogen bonding and the hydrophobic effect.

Authors:  Q Zou; S M Habermann-Rottinghaus; K P Murphy
Journal:  Proteins       Date:  1998-05-01

8.  Elucidating the folding problem of helical peptides using empirical parameters.

Authors:  V Muñoz; L Serrano
Journal:  Nat Struct Biol       Date:  1994-06

9.  Interaction of the peptide bond with solvent water: a vapor phase analysis.

Authors:  R Wolfenden
Journal:  Biochemistry       Date:  1978-01-10       Impact factor: 3.162

10.  Trifluoroethanol effects on helix propensity and electrostatic interactions in the helical peptide from ribonuclease T1.

Authors:  J K Myers; C N Pace; J M Scholtz
Journal:  Protein Sci       Date:  1998-02       Impact factor: 6.725

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  31 in total

1.  The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding.

Authors:  R V Pappu; R Srinivasan; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

2.  The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation.

Authors:  Maria M Lopez; Der-Hang Chin; Robert L Baldwin; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

3.  Helix formation via conformation diffusion search.

Authors:  Cheng-Yen Huang; Zelleka Getahun; Yongjin Zhu; Jason W Klemke; William F DeGrado; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

4.  Effects of charged amino acids at b and c heptad positions on specificity and stability of four-chain coiled coils.

Authors:  C Vu; J Robblee; K M Werner; R Fairman
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

5.  H-bonding mediates polarization of peptide groups in folded proteins.

Authors:  Nenad Juranić; Slobodan Macura; Franklyn G Prendergast
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

6.  Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity.

Authors:  Dmitri N Ermolenko; John M Richardson; George I Makhatadze
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

7.  A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA).

Authors:  Patrick J Fleming; Nicholas C Fitzkee; Mihaly Mezei; Rajgopal Srinivasan; George D Rose
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

8.  Enthalpy of helix-coil transition: missing link in rationalizing the thermodynamics of helix-forming propensities of the amino acid residues.

Authors:  John M Richardson; Maria M Lopez; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-25       Impact factor: 11.205

9.  Transition state and ground state properties of the helix-coil transition in peptides deduced from high-pressure studies.

Authors:  Sabine Neumaier; Maren Büttner; Annett Bachmann; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Role of backbone solvation in determining thermodynamic beta propensities of the amino acids.

Authors:  Franc Avbelj; Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

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