Literature DB >> 618544

Interaction of the peptide bond with solvent water: a vapor phase analysis.

R Wolfenden.   

Abstract

A dynamic technique, using radioactivity as a means of detection, makes it possible to measure the partial pressures of highly polar compounds in dilute aqueous solution. The results can be expressed in terms of the dimensionless distribution coefficient for transfer of a compound from dilute aqueous solution to the vapor phase. For acetic acid this coefficient is 1.1 X 10(-5), for acetamide 7.6 X 10(-8), for N-methylacetamide 4.1 X 10(-8), and for N,N-dimethylacetamide 5.4 X 10(-7). Thus acetamide is much more strongly solvated than the uncharged acetic acid molecule. The results suggest: (1) that the peptide bond represents an extreme among uncharged functional groups in the degree to which it is stabilized by solvent water; (2) that the very great hydrophilic character of the peptide bond may be associated mainly with hydrogen bonding of the solvent to the carbonyl oxygen atom (rather than the N-H group); and (3) that the observed equilibria of biosynthesis and hydrolysis of peptide bonds in aqueous solution are largely determined by differences between reactants and products in their free energies of solvation. It is anticipated that where "bound" water is found in proteins, it will often be found to be associated with peptide bonds, and will tend to be associated with the C-O group rather than with the N-H group.

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Year:  1978        PMID: 618544     DOI: 10.1021/bi00594a030

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  26 in total

1.  Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities.

Authors:  P Luo; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added.

Authors:  Franc Avbelj; Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

3.  AM1-SM2 and PM3-SM3 parameterized SCF solvation models for free energies in aqueous solution.

Authors:  C J Cramer; D G Truhlar
Journal:  J Comput Aided Mol Des       Date:  1992-12       Impact factor: 3.686

4.  Kirkwood-Buff analysis of aqueous N-methylacetamide and acetamide solutions modeled by the CHARMM additive and Drude polarizable force fields.

Authors:  Bin Lin; Pedro E M Lopes; Benoît Roux; Alexander D MacKerell
Journal:  J Chem Phys       Date:  2013-08-28       Impact factor: 3.488

5.  Role of backbone solvation in determining thermodynamic beta propensities of the amino acids.

Authors:  Franc Avbelj; Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

6.  Hydration Properties and Solvent Effects for All-Atom Solutes in Polarizable Coarse-Grained Water.

Authors:  Xin Cindy Yan; Julian Tirado-Rives; William L Jorgensen
Journal:  J Phys Chem B       Date:  2016-03-01       Impact factor: 2.991

7.  Absolute hydration free energies of blocked amino acids: implications for protein solvation and stability.

Authors:  Gerhard König; Stefan Bruckner; Stefan Boresch
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

8.  Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions.

Authors:  Scott L Crick; Murali Jayaraman; Carl Frieden; Ronald Wetzel; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

9.  Origin of the neighboring residue effect on peptide backbone conformation.

Authors:  Franc Avbelj; Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-14       Impact factor: 11.205

Review 10.  Describing sequence-ensemble relationships for intrinsically disordered proteins.

Authors:  Albert H Mao; Nicholas Lyle; Rohit V Pappu
Journal:  Biochem J       Date:  2013-01-15       Impact factor: 3.857

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