Literature DB >> 10089401

Refined structure of orthorhombic lysozyme crystallized at high temperature: correlation between morphology and intermolecular contacts.

H Oki1, Y Matsuura, H Komatsu, A A Chernov.   

Abstract

The structure of orthorhombic hen egg-white lysozyme (HEWL) crystallized at 310 K has been refined at 1.7 A resolution. Large displacements of the side-chain atoms with respect to the tetragonal structure were observed in many places, in contrast to small displacements of the main-chain atoms. A chloride-ion binding site was observed at an interface of two molecules, but at a different position to the binding site in the tetragonal form. The analysis of intermolecular contacts in the crystal has shown the presence of three independent intermolecular contacts which are called macrobonds A, B and C. Arginine side chains are frequently involved in these macrobonds, suggesting that the high frequency of this residue in HEWL may be a possible reason for the multiple polymorphs of this protein. The crystal forms were determined using a light-reflecting device on a four-circle diffractometer. Correlations between crystal forms and the three-dimensional macrobond networks were interpreted in terms of their components in various crystallographic planes, making use of approximate strengths of hydrogen-bond and van der Waals interatomic forces.

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Year:  1999        PMID: 10089401     DOI: 10.1107/S0907444998008713

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

2.  Two types of amorphous protein particles facilitate crystal nucleation.

Authors:  Tomoya Yamazaki; Yuki Kimura; Peter G Vekilov; Erika Furukawa; Manabu Shirai; Hiroaki Matsumoto; Alexander E S Van Driessche; Katsuo Tsukamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

3.  Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Authors:  Bruce R Donald; Jeffrey Martin
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-08-01       Impact factor: 9.795

4.  An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.

Authors:  Christopher James Langmead; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

5.  Electrophoresis in protein crystal: nonequilibrium molecular dynamics simulations.

Authors:  Zhongqiao Hu; Jianwen Jiang
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

6.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

7.  Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation.

Authors:  Pankaj Sharma; Neha Verma; Pradip Kumar Singh; Suresh Korpole
Journal:  Sci Rep       Date:  2016-03-01       Impact factor: 4.379

  7 in total

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