Literature DB >> 9928484

The diverse and dynamic structure of bacterial genomes.

S Casjens1.   

Abstract

Bacterial genome sizes, which range from 500 to 10,000 kbp, are within the current scope of operation of large-scale nucleotide sequence determination facilities. To date, 8 complete bacterial genomes have been sequenced, and at least 40 more will be completed in the near future. Such projects give wonderfully detailed information concerning the structure of the organism's genes and the overall organization of the sequenced genomes. It will be very important to put this incredible wealth of detail into a larger biological picture: How does this information apply to the genomes of related genera, related species, or even other individuals from the same species? Recent advances in pulsed-field gel electrophoretic technology have facilitated the construction of complete and accurate physical maps of bacterial chromosomes, and the many maps constructed in the past decade have revealed unexpected and substantial differences in genome size and organization even among closely related bacteria. This review focuses on this recently appreciated plasticity in structure of bacterial genomes, and diversity in genome size, replicon geometry, and chromosome number are discussed at inter- and intraspecies levels.

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Year:  1998        PMID: 9928484     DOI: 10.1146/annurev.genet.32.1.339

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  47 in total

1.  Decoupling of genome size and sequence divergence in a symbiotic bacterium.

Authors:  J J Wernegreen; H Ochman; I B Jones; N A Moran
Journal:  J Bacteriol       Date:  2000-07       Impact factor: 3.490

Review 2.  Horizontal gene transfer and bacterial diversity.

Authors:  Chitra Dutta; Archana Pan
Journal:  J Biosci       Date:  2002-02       Impact factor: 1.826

3.  Cre-loxP recombination system for large genome rearrangements in Lactococcus lactis.

Authors:  Nathalie Campo; Marie-Line Daveran-Mingot; Kees Leenhouts; Paul Ritzenthaler; Pascal Le Bourgeois
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

4.  Associations between inverted repeats and the structural evolution of bacterial genomes.

Authors:  Guillaume Achaz; Eric Coissac; Pierre Netter; Eduardo P C Rocha
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

Review 5.  Comparative genomics: methods and applications.

Authors:  Bernhard Haubold; Thomas Wiehe
Journal:  Naturwissenschaften       Date:  2004-06-25

6.  Comparative genomics and the gene complement of a minimal cell.

Authors:  Sara Islas; Arturo Becerra; P Luigi Luisi; Antonio Lazcano
Journal:  Orig Life Evol Biosph       Date:  2004-02       Impact factor: 1.950

Review 7.  Eukaryotes first: how could that be?

Authors:  Carlos Mariscal; W Ford Doolittle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

8.  Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei.

Authors:  Sabyasachi Das; Sandip Paul; Chitra Dutta
Journal:  J Mol Evol       Date:  2006-03-22       Impact factor: 2.395

9.  Inherent size constraints on prokaryote gene networks due to "accelerating" growth.

Authors:  M J Gagen; J S Mattick
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

10.  The effect of chromosome geometry on genetic diversity.

Authors:  Pradeep Reddy Marri; Leigh K Harris; Kathryn Houmiel; Steven C Slater; Howard Ochman
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

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