Literature DB >> 9927459

A highly conserved sequence in the 3'-untranslated region of the drosophila Adh gene plays a functional role in Adh expression.

J Parsch1, W Stephan, S Tanda.   

Abstract

Phylogenetic analysis identified a highly conserved eight-base sequence (AAGGCTGA) within the 3'-untranslated region (UTR) of the Drosophila alcohol dehydrogenase gene, Adh. To examine the functional significance of this conserved motif, we performed in vitro deletion mutagenesis on the D. melanogaster Adh gene followed by P-element-mediated germline transformation. Deletion of all or part of the eight-base sequence leads to a twofold increase in in vivo ADH enzymatic activity. The increase in activity is temporally and spatially general and is the result of an underlying increase in Adh transcript. These results indicate that the conserved 3'-UTR motif plays a functional role in the negative regulation of Adh gene expression. The evolutionary significance of our results may be understood in the context of the amino acid change that produces the ADH-F allele and also leads to a twofold increase in ADH activity. While there is compelling evidence that the amino acid replacement has been a target of positive selection, the conservation of the 3'-UTR sequence suggests that it is under strong purifying selection. The selective difference between these two sequence changes, which have similar effects on ADH activity, may be explained by different metabolic costs associated with the increase in activity.

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Year:  1999        PMID: 9927459      PMCID: PMC1460503     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  30 in total

1.  Structural analysis of the ADHS electromorph of Drosophila melanogaster.

Authors:  T S Fletcher; F J Ayala; D R Thatcher; G K Chambers
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

2.  Position-independent germline transformation in Drosophila using a cuticle pigmentation gene as a selectable marker.

Authors:  J S Patton; X V Gomes; P K Geyer
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

3.  Protein measurement with the Folin phenol reagent.

Authors:  O H LOWRY; N J ROSEBROUGH; A L FARR; R J RANDALL
Journal:  J Biol Chem       Date:  1951-11       Impact factor: 5.157

4.  A stable genomic source of P element transposase in Drosophila melanogaster.

Authors:  H M Robertson; C R Preston; R W Phillis; D M Johnson-Schlitz; W K Benz; W R Engels
Journal:  Genetics       Date:  1988-03       Impact factor: 4.562

5.  Genetic control of alcohol dehydrogenase levels in Drosophila.

Authors:  G Maroni
Journal:  Biochem Genet       Date:  1978-06       Impact factor: 1.890

6.  Use of P-element-mediated transformation to identify the molecular basis of naturally occurring variants affecting Adh expression in Drosophila melanogaster.

Authors:  C C Laurie-Ahlberg; L F Stam
Journal:  Genetics       Date:  1987-01       Impact factor: 4.562

7.  The effect of dietary ethanol on the composition of lipids of Drosophila melanogaster larvae.

Authors:  B W Geer; S W McKechnie; M L Langevin
Journal:  Biochem Genet       Date:  1986-02       Impact factor: 1.890

8.  Quantitative analysis of RNA produced by slow and fast alleles of Adh in Drosophila melanogaster.

Authors:  C C Laurie; L F Stam
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

9.  Expression of an activated ras gene causes developmental abnormalities in transgenic Drosophila melanogaster.

Authors:  J G Bishop; V G Corces
Journal:  Genes Dev       Date:  1988-05       Impact factor: 11.361

10.  Use of in vitro mutagenesis to analyze the molecular basis of the difference in Adh expression associated with the allozyme polymorphism in Drosophila melanogaster.

Authors:  M Choudhary; C C Laurie
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

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  11 in total

1.  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

Authors:  Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Flavio Mignone; Carmela Gissi; Cecilia Saccone
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Functional analysis of Drosophila melanogaster gene regulatory sequences by transgene coplacement.

Authors:  John Parsch
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

3.  Deletion of a conserved regulatory element in the Drosophila Adh gene leads to increased alcohol dehydrogenase activity but also delays development.

Authors:  J Parsch; J A Russell; I Beerman; D L Hartl; W Stephan
Journal:  Genetics       Date:  2000-09       Impact factor: 4.562

4.  Phosphorylation of poly(rC) binding protein 1 (PCBP1) contributes to stabilization of mu opioid receptor (MOR) mRNA via interaction with AU-rich element RNA-binding protein 1 (AUF1) and poly A binding protein (PABP).

Authors:  Cheol Kyu Hwang; Yadav Wagley; Ping-Yee Law; Li-Na Wei; Horace H Loh
Journal:  Gene       Date:  2016-11-09       Impact factor: 3.688

5.  Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene.

Authors:  Ying Chen; Wolfgang Stephan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-12       Impact factor: 11.205

6.  Experimentally increased codon bias in the Drosophila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity.

Authors:  Winfried Hense; Nathan Anderson; Stephan Hutter; Wolfgang Stephan; John Parsch; David B Carlini
Journal:  Genetics       Date:  2009-12-04       Impact factor: 4.562

7.  In silico investigations on functional and haplotype tag SNPs associated with congenital long QT syndromes (LQTSs).

Authors:  C Sudandiradoss; Rao Sethumadhavan
Journal:  Genomic Med       Date:  2009-02-12

8.  Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium.

Authors:  Francesco Catania; Michael Lynch
Journal:  BMC Evol Biol       Date:  2010-05-04       Impact factor: 3.260

9.  Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the Drosophila Adh gene.

Authors:  John F Baines; John Parsch; Wolfgang Stephan
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

10.  Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures.

Authors:  Nina Stoletzki
Journal:  BMC Evol Biol       Date:  2008-07-31       Impact factor: 3.260

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