Literature DB >> 9923707

Assigning the NMR spectra of aromatic amino acids in proteins: analysis of two Ets pointed domains.

C M Slupsky1, L N Gentile, L P McIntosh.   

Abstract

The measurement of interproton nuclear Overhauser enhancements (NOEs) and dihedral angle restraints of aromatic amino acids is a critical step towards determining the structure of a protein. The complete assignment of the resonances from aromatic rings and the subsequent resolution and identification of their associated NOEs, however, can be a difficult task. Shown here is a strategy for assigning the 1H, 13C, and 15N signals from the aromatic side chains of histidine, tryptophan, tyrosine, and phenylalanine using a suite of homo- and hetero-nuclear scalar and NOE correlation experiments, as well as selective deuterium isotope labelling. In addition, a comparison of NOE information obtained from homonuclear NOE spectroscopy (NOESY) and 13C-edited NOESY-heteronuclear single quantum correlation experiments indicates that high-resolution homonuclear two-dimensional NOESY spectra of selectively deuterated proteins are invaluable for obtaining distance restraints to the aromatic residues.

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Year:  1998        PMID: 9923707     DOI: 10.1139/bcb-76-2-3-379

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  6 in total

1.  Chemical shift and secondary structure conservation of the PNT/SAM domains from the ets family of transcription factors.

Authors:  Cameron D Mackereth; Manuela Schärpf; Lisa N Gentile; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2002-09       Impact factor: 2.835

2.  Heterologous expression of hen egg white lysozyme and resonance assignment of tryptophan side chains in its non-native states.

Authors:  Christian Schlörb; Katrin Ackermann; Christian Richter; Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

3.  Identification and structural characterization of a CBP/p300-binding domain from the ETS family transcription factor GABP alpha.

Authors:  Hyun-Seo Kang; Mary L Nelson; Cameron D Mackereth; Manuela Schärpf; Barbara J Graves; Lawrence P McIntosh
Journal:  J Mol Biol       Date:  2008-01-30       Impact factor: 5.469

4.  Unusual biophysics of immune signaling-related intrinsically disordered proteins.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2010-10

5.  α-Ketoacids as precursors for phenylalanine and tyrosine labelling in cell-based protein overexpression.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11-22       Impact factor: 2.835

6.  A DNA mimic: the structure and mechanism of action for the anti-repressor protein AbbA.

Authors:  Ashley T Tucker; Benjamin G Bobay; Allison V Banse; Andrew L Olson; Erik J Soderblom; M Arthur Moseley; Richele J Thompson; Kristen M Varney; Richard Losick; John Cavanagh
Journal:  J Mol Biol       Date:  2014-02-15       Impact factor: 5.469

  6 in total

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