Literature DB >> 9847165

5S Ribosomal RNA Data Bank.

M Szymanski1, M Z Barciszewska, J Barciszewski, V A Erdmann.   

Abstract

This paper presents the updated version of the data base of ribosomal 5S ribonucleic acids (5S rRNA) and their genes (5S rDNA). This edition of the data bank contains 1889 primary structures of 5S rRNA and 5S rDNA. These include 60 archaebacterial, 439 eubacterial, 63 plastid, 9 mitochondrial and 1318 eukaryotic sequences. The nucleotide sequences of 5S rRNAs or 5S rDNAs are divided according to the taxonomic position of organisms. The sequences stored in the database can be viewed and retrieved using the taxonomic browser at the URL: http://rose.man.poznan.pl/5SData/5SRNA.html++ +

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Year:  1999        PMID: 9847165      PMCID: PMC148120          DOI: 10.1093/nar/27.1.158

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  5S ribosomal RNA database Y2K.

Authors:  M Szymanski; M Z Barciszewska; J Barciszewski; V A Erdmann
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Novel perspectives in wood certification and forensics: dry wood as a source of DNA.

Authors:  Marie-France Deguilloux; Marie-Hélène Pemonge; Rémy J Petit
Journal:  Proc Biol Sci       Date:  2002-05-22       Impact factor: 5.349

3.  Conformational dynamics of a 5S rRNA hairpin domain containing loop D and a single nucleotide bulge.

Authors:  J Sarzynska; T Kulinski; L Nilsson
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

4.  Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.

Authors:  Y Xiong; M Sundaralingam
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

5.  Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Authors:  T Dandekar; M Huynen; J T Regula; B Ueberle; C U Zimmermann; M A Andrade; T Doerks; L Sánchez-Pulido; B Snel; M Suyama; Y P Yuan; R Herrmann; P Bork
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

6.  Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.

Authors:  Zhenjiang Xu; David H Mathews
Journal:  Bioinformatics       Date:  2010-12-30       Impact factor: 6.937

7.  Organization, structure, and variability of the rRNA operon of the Whipple's disease bacterium (Tropheryma whippelii).

Authors:  M Maiwald; A von Herbay; P W Lepp; D A Relman
Journal:  J Bacteriol       Date:  2000-06       Impact factor: 3.490

8.  Metabolic Survival Adaptations of Plasmodium falciparum Exposed to Sublethal Doses of Fosmidomycin.

Authors:  Shivendra G Tewari; Krithika Rajaram; Russell P Swift; Jaques Reifman; Sean T Prigge; Anders Wallqvist
Journal:  Antimicrob Agents Chemother       Date:  2021-03-18       Impact factor: 5.191

9.  Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Authors:  Sara A Lincoln; Brenner Wai; John M Eppley; Matthew J Church; Roger E Summons; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-19       Impact factor: 11.205

10.  Expansion segments in bacterial and archaeal 5S ribosomal RNAs.

Authors:  Victor G Stepanov; George E Fox
Journal:  RNA       Date:  2020-11-12       Impact factor: 4.942

  10 in total

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