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Literature DB >> 10592212

5S ribosomal RNA database Y2K.

M Szymanski¹, M Z Barciszewska, J Barciszewski, V A Erdmann.

Abstract

This paper presents the updated version (Y2K) of the database of ribosomal 5S ribonucleic acids (5S rRNA) and their genes (5S rDNA), http://rose.man/poznan.pl/5SData/index.html. This edition of the database contains 1985primary structures of 5S rRNA and 5S rDNA. They include 60 archaebacterial, 470 eubacterial, 63 plastid, nine mitochondrial and 1383 eukaryotic sequences. The nucleotide sequences of the 5S rRNAs or 5S rDNAs are divided according to the taxonomic position of the source organisms.

Entities: Chemical Species

Mesh：

Substances：
RNA, Ribosomal, 5S

Year: 2000 PMID： 10592212 PMCID： PMC102473 DOI： 10.1093/nar/28.1.166

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

37 in total

1. [Apropos of the presence of weak molecular weight RNA in the ribosomes of Escherichia Coli].

Authors: R ROSSET; R MONIER
Journal: Biochim Biophys Acta Date: 1963-04-30

2. Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain.

Authors: C C Correll; B Freeborn; P B Moore; T A Steitz
Journal: Cell Date: 1997-11-28 Impact factor: 41.582

3. In vivo analyses of upstream promoter sequence elements in the 5 S rRNA gene from Saccharomyces cerevisiae.

Authors: Y Lee; W M Wong; D Guyer; A M Erkine; R N Nazar
Journal: J Mol Biol Date: 1997-06-27 Impact factor: 5.469

4. Interaction of the HIV-1 rev cofactor eukaryotic initiation factor 5A with ribosomal protein L5.

Authors: O Schatz; M Oft; C Dascher; M Schebesta; O Rosorius; H Jaksche; M Dobrovnik; D Bevec; J Hauber
Journal: Proc Natl Acad Sci U S A Date: 1998-02-17 Impact factor: 11.205

5. Nickel- and cobalt-dependent reagents identify structural features of RNA that are not detected by dimethyl sulfate or RNase T1.

Authors: P Zheng; C J Burrows; S E Rokita
Journal: Biochemistry Date: 1998-02-24 Impact factor: 3.162

6. Structural dynamics of HIV-1 Rev and its complexes with RRE and 5S RNA.

Authors: W C Lam; J M Seifert; F Amberger; C Graf; M Auer; D P Millar
Journal: Biochemistry Date: 1998-02-17 Impact factor: 3.162

Review 7. Ribosomal 5S RNA: tertiary structure and interactions with proteins.

Authors: M Z Barciszewska; V A Erdmann; J Barciszewski
Journal: Biol Rev Camb Philos Soc Date: 1996-02

8. A novel neurotoxin, cobrotoxin b, from Naja naja atra (Taiwan cobra) venom: purification, characterization, and gene organization.

Authors: L S Chang; Y C Chou; S R Lin; B N Wu; J Lin; E Hong; Y J Sun; C D Hsiao
Journal: J Biochem Date: 1997-12 Impact factor: 3.387

9. Further study on association of 5SrRNA-L5 protein complex and methionyl-tRNA to methionyl-tRNA synthetase in the macromolecular aminoacyl-tRNA synthetase complex.

Authors: K Ogata; R Ohno; S Morioka; K Terao
Journal: J Biochem Date: 1996-11 Impact factor: 3.387

10. The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins.

Authors: A Dallas; P B Moore
Journal: Structure Date: 1997-12-15 Impact factor: 5.006

20 in total

1. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Authors: J Wuyts; Y Van de Peer; R De Wachter
Journal: Nucleic Acids Res Date: 2001-12-15 Impact factor: 16.971

2. Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization.

Authors: David H Mathews
Journal: RNA Date: 2004-08 Impact factor: 4.942

3. The robustness of naturally and artificially selected nucleic acid secondary structures.

Authors: Lauren Ancel Meyers; Jennifer F Lee; Matthew Cowperthwaite; Andrew D Ellington
Journal: J Mol Evol Date: 2004-06 Impact factor: 2.395

4. The origin of the 5S ribosomal RNA molecule could have been caused by a single inverse duplication: strong evidence from its sequences.

Authors: Sergio Branciamore; Massimo Di Giulio
Journal: J Mol Evol Date: 2012-04-11 Impact factor: 2.395

5. Evolutionary patterns of non-coding RNAs.

Authors: Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal: Theory Biosci Date: 2005-04 Impact factor: 1.919