Literature DB >> 9847140

Eco Cyc: encyclopedia of Escherichia coli genes and metabolism.

P D Karp1, M Riley, S M Paley, A Pellegrini-Toole, M Krummenacker.   

Abstract

The EcoCyc database describes the genome and gene products of Escherichia coli, its metabolic and signal-transduction pathways, and its tRNAs. The database describes 4391 genes of E.coli, 695 enzymes encoded by a subset of these genes, 904 metabolic reactions that occur in E.coli, and the organization of these reactions into 129 metabolic pathways. The EcoCyc graphical user interface allows scientists to query and explore the EcoCyc database using visualization tools such as genomic-map browsers and automatic layouts of metabolic pathways. EcoCyc has many references to the primary literature, and is a (qualitative) computational model of E. coli metabolism. EcoCyc is available at URL http://ecocyc. PangeaSystems.com/ecocyc/

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Year:  1999        PMID: 9847140      PMCID: PMC148095          DOI: 10.1093/nar/27.1.55

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  DIP: the database of interacting proteins.

Authors:  I Xenarios; D W Rice; L Salwinski; M K Baron; E M Marcotte; D Eisenberg
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  EcoGene: a genome sequence database for Escherichia coli K-12.

Authors:  K E Rudd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Global properties of the metabolic map of Escherichia coli.

Authors:  C A Ouzounis; P D Karp
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

Review 4.  Search and discovery strategies for biotechnology: the paradigm shift.

Authors:  A T Bull; A C Ward; M Goodfellow
Journal:  Microbiol Mol Biol Rev       Date:  2000-09       Impact factor: 11.056

5.  Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae.

Authors:  Jane A Thanassi; Sandra L Hartman-Neumann; Thomas J Dougherty; Brian A Dougherty; Michael J Pucci
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

6.  Text mining neuroscience journal articles to populate neuroscience databases.

Authors:  Chiquito J Crasto; Luis N Marenco; Michele Migliore; Buqing Mao; Prakash M Nadkarni; Perry Miller; Gordon M Shepherd
Journal:  Neuroinformatics       Date:  2003

7.  The modelling of a primitive 'sustainable' conservative cell.

Authors:  James B Bassingthwaighte
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2001-06       Impact factor: 4.226

Review 8.  The EcoCyc Database.

Authors:  Peter D Karp; Wai Kit Ong; Suzanne Paley; Richard Billington; Ron Caspi; Carol Fulcher; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Peter E Midford; Pallavi Subhraveti; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martinez; Alberto Santos-Zavaleta; Amanda Mackie; Julio Collado-Vides; Ingrid M Keseler; Ian Paulsen
Journal:  EcoSal Plus       Date:  2018-11

9.  Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli.

Authors:  Natividad Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-01       Impact factor: 11.205

10.  Carbon flux analysis in a pantothenate overproducing Corynebacterium glutamicum strain.

Authors:  Christophe Chassagnole; Fabien Létisse; Audrey Diano; Nic D Lindley
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

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