Literature DB >> 21938260

The modelling of a primitive 'sustainable' conservative cell.

James B Bassingthwaighte1.   

Abstract

The simple sustainable or 'eternal' cell model, assuming preservation of all proteins, is designed as a building block, a primitive element upon which one can build more complete functional cell models of various types, representing various species. In the modelling we emphasize the electrophysiological aspects, in part because these are a well-developed component of cell models and because membrane potentials and their fluctuations have been generally omitted from metabolically oriented cell models in the past. Fluctuations in membrane potential deserve heightened consideration because probably all cells have negative intracellular potentials and most cells demonstrate electrical activity with vesicular extrusion, receptor occupancy, as well as with stimulated excitation resulting in regenerative depolarization. The emphasis is on the balances of mass, charge, and of chemical species while accounting for substrate uptake, metabolism and metabolite loss from the cell. By starting with a primitive representation we emphasize the conservation ideas. As more advanced models are generated they must adhere to the same basic principles as are required for the most primitive incomplete model.

Year:  2001        PMID: 21938260      PMCID: PMC3175798          DOI: 10.1098/rsta.2001.0821

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  57 in total

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Authors:  C H Schilling; J S Edwards; B O Palsson
Journal:  Biotechnol Prog       Date:  1999 May-Jun

2.  Differentiation of fast and slow muscles in the cat hind limb.

Authors:  A J BULLER; J C ECCLES; R M ECCLES
Journal:  J Physiol       Date:  1960-02       Impact factor: 5.182

3.  Network analysis of intermediary metabolism using linear optimization. I. Development of mathematical formalism.

Authors:  J M Savinell; B O Palsson
Journal:  J Theor Biol       Date:  1992-02-21       Impact factor: 2.691

4.  Chaos in multi-looped negative feedback systems.

Authors:  L Glass; C P Malta
Journal:  J Theor Biol       Date:  1990-07-24       Impact factor: 2.691

5.  Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processes.

Authors:  D Noble; A Varghese; P Kohl; P Noble
Journal:  Can J Cardiol       Date:  1998-01       Impact factor: 5.223

6.  Cellular mechanisms of cardiac mechano-electric feedback in a mathematical model.

Authors:  P Kohl; K Day; D Noble
Journal:  Can J Cardiol       Date:  1998-01       Impact factor: 5.223

7.  Input-response relationships in the dynamics of glycolysis.

Authors:  M Markus; B Hess
Journal:  Arch Biol Med Exp (Santiago)       Date:  1985-12

8.  The effect of lateral mobility on the binding and reaction rate at membrane sites.

Authors:  J N Finkelstein; S Ghosh
Journal:  Physiol Chem Phys Med NMR       Date:  1985

9.  Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: equations and parameter refinement.

Authors:  P J Mulquiney; P W Kuchel
Journal:  Biochem J       Date:  1999-09-15       Impact factor: 3.857

10.  Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: in vivo kinetic characterization of 2,3-bisphosphoglycerate synthase/phosphatase using 13C and 31P NMR.

Authors:  P J Mulquiney; W A Bubb; P W Kuchel
Journal:  Biochem J       Date:  1999-09-15       Impact factor: 3.857

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  8 in total

Review 1.  The computational integrated myocyte: a view into the virtual heart.

Authors:  James B Bassingthwaighte; Kalyan C Vinnakota
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

2.  Strategies and Tactics in Multiscale Modeling of Cell-to-Organ Systems.

Authors:  James B Bassingthwaighte; Howard Jay Chizeck; Les E Atlas
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2006-04       Impact factor: 10.961

Review 3.  Multiscale modeling of cardiac cellular energetics.

Authors:  James B Bassingthwaighte; Howard J Chizeck; Les E Atlas; Hong Qian
Journal:  Ann N Y Acad Sci       Date:  2005-06       Impact factor: 5.691

4.  Cooperativity and specificity in enzyme kinetics: a single-molecule time-based perspective.

Authors:  Hong Qian
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

Review 5.  Interpreting genetic effects through models of cardiac electromechanics.

Authors:  S A Niederer; S Land; S W Omholt; N P Smith
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-10-05       Impact factor: 4.733

6.  Simultaneous blood-tissue exchange of oxygen, carbon dioxide, bicarbonate, and hydrogen ion.

Authors:  Ranjan K Dash; James B Bassingthwaighte
Journal:  Ann Biomed Eng       Date:  2006-05-30       Impact factor: 3.934

Review 7.  Modeling to link regional myocardial work, metabolism and blood flows.

Authors:  James B Bassingthwaighte; Daniel A Beard; Brian E Carlson; Ranjan K Dash; Kalyan Vinnakota
Journal:  Ann Biomed Eng       Date:  2012-08-23       Impact factor: 3.934

8.  A biophysical model of the mitochondrial respiratory system and oxidative phosphorylation.

Authors:  Daniel A Beard
Journal:  PLoS Comput Biol       Date:  2005-09-09       Impact factor: 4.475

  8 in total

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