Literature DB >> 10592249

DIP: the database of interacting proteins.

I Xenarios1, D W Rice, L Salwinski, M K Baron, E M Marcotte, D Eisenberg.   

Abstract

The Database of Interacting Proteins (DIP; http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein-protein interactions. This database is intended to provide the scientific community with a comprehensive and integrated tool for browsing and efficiently extracting information about protein interactions and interaction networks in biological processes. Beyond cataloging details of protein-protein interactions, the DIP is useful for understanding protein function and protein-protein relationships, studying the properties of networks of interacting proteins, benchmarking predictions of protein-protein interactions, and studying the evolution of protein-protein interactions.

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Year:  2000        PMID: 10592249      PMCID: PMC102387          DOI: 10.1093/nar/28.1.289

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Detecting protein function and protein-protein interactions from genome sequences.

Authors:  E M Marcotte; M Pellegrini; H L Ng; D W Rice; T O Yeates; D Eisenberg
Journal:  Science       Date:  1999-07-30       Impact factor: 47.728

2.  A database for cell signaling networks.

Authors:  T Takai-Igarashi; Y Nadaoka; T Kaminuma
Journal:  J Comput Biol       Date:  1998       Impact factor: 1.479

3.  The PIR-International Protein Sequence Database.

Authors:  W C Barker; J S Garavelli; P B McGarvey; C R Marzec; B C Orcutt; G Y Srinivasarao; L S Yeh; R S Ledley; H W Mewes; F Pfeiffer; A Tsugita; C Wu
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  KEGG: Kyoto Encyclopedia of Genes and Genomes.

Authors:  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  Recent changes in the GenBank On-line Service.

Authors:  D Benton
Journal:  Nucleic Acids Res       Date:  1990-03-25       Impact factor: 16.971

6.  Protein binding and signaling properties of RIN1 suggest a unique effector function.

Authors:  L Han; D Wong; A Dhaka; D Afar; M White; W Xie; H Herschman; O Witte; J Colicelli
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-13       Impact factor: 11.205

7.  Eco Cyc: encyclopedia of Escherichia coli genes and metabolism.

Authors:  P D Karp; M Riley; S M Paley; A Pellegrini-Toole; M Krummenacker
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

8.  Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet database.

Authors:  C Sanchez; C Lachaize; F Janody; B Bellon; L Röder; J Euzenat; F Rechenmann; B Jacq
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

  8 in total
  290 in total

1.  BIND--The Biomolecular Interaction Network Database.

Authors:  G D Bader; I Donaldson; C Wolting; B F Ouellette; T Pawson; C W Hogue
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  DIP: The Database of Interacting Proteins: 2001 update.

Authors:  I Xenarios; E Fernandez; L Salwinski; X J Duan; M J Thompson; E M Marcotte; D Eisenberg
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Authors:  J Qian; B Stenger; C A Wilson; J Lin; R Jansen; S A Teichmann; J Park; W G Krebs; H Yu; V Alexandrov; N Echols; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

4.  Relating whole-genome expression data with protein-protein interactions.

Authors:  Ronald Jansen; Dov Greenbaum; Mark Gerstein
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

5.  Probabilistic prediction of unknown metabolic and signal-transduction networks.

Authors:  S M Gomez; S H Lo; A Rzhetsky
Journal:  Genetics       Date:  2001-11       Impact factor: 4.562

6.  SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Authors:  P Bertone; Y Kluger; N Lan; D Zheng; D Christendat; A Yee; A M Edwards; C H Arrowsmith; G T Montelione; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

7.  Predictome: a database of putative functional links between proteins.

Authors:  Joseph C Mellor; Itai Yanai; Karl H Clodfelter; Julian Mintseris; Charles DeLisi
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  Interrogating protein interaction networks through structural biology.

Authors:  Patrick Aloy; Robert B Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

9.  The Database of Interacting Proteins: 2004 update.

Authors:  Lukasz Salwinski; Christopher S Miller; Adam J Smith; Frank K Pettit; James U Bowie; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Discovery of protein interaction networks shared by diseases.

Authors:  Lee Sam; Yang Liu; Jianrong Li; Carol Friedman; Yves A Lussier
Journal:  Pac Symp Biocomput       Date:  2007
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