Literature DB >> 9818272

Thermodynamic analysis of biomolecules: a volumetric approach.

T V Chalikian1, K J Breslauer.   

Abstract

Fundamental thermodynamic relationships reveal that volumetric studies on molecules of interest can yield useful new information. In particular, appropriately designed volumetric studies can characterize the properties of molecules as a function of solution conditions, including the role of solvation. Until recently, such studies on biologically interesting molecules have been limited because of the lack of readily available instrumentation with the requisite sensitivity; however, during the past decade, advances in the development of highly sensitive, small-volume densimetric, acoustic and high-pressure spectroscopic instrumentation have enabled biological molecules to be subjected to a wide range of volumetric studies. In fact, the volumetric methods used in these studies have already provided unique insights into the molecular origins of the intramolecular and intermolecular recognition events that modulate biomolecular processes. Of particular note are recent volumetric studies on globular proteins and nucleic acid duplexes. These studies have provided unique insights into the role of hydration in modulating the stabilities of these biopolymers, as well as their conformational transitions and ligand-binding properties.

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Year:  1998        PMID: 9818272     DOI: 10.1016/s0959-440x(98)80159-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  Conformational stability and thermodynamic characterization of the lipoic acid bearing domain of human mitochondrial branched chain alpha-ketoacid dehydrogenase.

Authors:  Mandar T Naik; Tai-Huang Huang
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

2.  Effect of hydrostatic pressure on unfolding of alpha-lactalbumin: volumetric equivalence of the molten globule and unfolded state.

Authors:  Y Kobashigawa; M Sakurai; K Nitta
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

3.  Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

4.  The enzyme horseradish peroxidase is less compressible at higher pressures.

Authors:  László Smeller; Judit Fidy
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

Review 5.  Developing Community Resources for Nucleic Acid Structures.

Authors:  Helen M Berman; Catherine L Lawson; Bohdan Schneider
Journal:  Life (Basel)       Date:  2022-04-06

6.  Two different proteins that compete for binding to thrombin have opposite kinetic and thermodynamic profiles.

Authors:  Abel Baerga-Ortiz; Simon Bergqvist; Jeffrey G Mandell; Elizabeth A Komives
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

7.  Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.

Authors:  Donald F Senear; Vira Tretyachenko-Ladokhina; Michael L Opel; Kimberly A Aeling; G Wesley Hatfield; Laurie M Franklin; Reuben C Darlington; J B Alexander Ross
Journal:  Nucleic Acids Res       Date:  2007-02-25       Impact factor: 16.971

8.  Bioinformatic analysis of the protein/DNA interface.

Authors:  Bohdan Schneider; Jirí Cerný; Daniel Svozil; Petr Cech; Jean-Christophe Gelly; Alexandre G de Brevern
Journal:  Nucleic Acids Res       Date:  2013-12-11       Impact factor: 16.971

9.  Volumetric Investigations on Molecular Interactions of Glycine/l-alanine in Aqueous Citric Acid Solutions at Different Temperatures.

Authors:  Poonam Patyar; Gurpreet Kaur; Tarnveer Kaur
Journal:  J Solution Chem       Date:  2018-11-19       Impact factor: 1.677

10.  Weighted persistent homology for osmolyte molecular aggregation and hydrogen-bonding network analysis.

Authors:  D Vijay Anand; Zhenyu Meng; Kelin Xia; Yuguang Mu
Journal:  Sci Rep       Date:  2020-06-16       Impact factor: 4.379

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