Literature DB >> 9818164

Imposing specificity by localization: mechanism and evolvability.

M Ptashne1, A Gann.   

Abstract

Cells detect extracellular signals by allostery and then give those signals meaning by 'regulated localization'. We suggest that this formulation applies to many biological processes and is particularly well illustrated by the mechanisms of gene regulation. Analysis of these mechanisms reveals that regulated localization requires simple molecular interactions that are readily used combinatorially. This system of regulation is highly 'evolvable', and its use accounts, at least in part, for the nature of the complexities observed in biological systems.

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Year:  1998        PMID: 9818164     DOI: 10.1016/s0960-9822(07)00508-8

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  21 in total

1.  A 9-nt segment of a cellular mRNA can function as an internal ribosome entry site (IRES) and when present in linked multiple copies greatly enhances IRES activity.

Authors:  S A Chappell; G M Edelman; V P Mauro
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Positive and negative regulation of endogenous genes by designed transcription factors.

Authors:  R R Beerli; B Dreier; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

3.  Transcriptional activation by artificial recruitment in yeast is influenced by promoter architecture and downstream sequences.

Authors:  L Gaudreau; M Keaveney; J Nevado; Z Zaman; G O Bryant; K Struhl; M Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

4.  Transcriptional activation by artificial recruitment in mammalian cells.

Authors:  J Nevado; L Gaudreau; M Adam; M Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

5.  Effects of DNA sequence and structure on binding of RecA to single-stranded DNA.

Authors:  R Bar-Ziv; A Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

6.  Transcriptional regulation of protein complexes and biological pathways.

Authors:  Sridhar Hannenhalli; Samuel Levy
Journal:  Mamm Genome       Date:  2003-09       Impact factor: 2.957

7.  Regulatory circuit design and evolution using phage lambda.

Authors:  Shota Atsumi; John W Little
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

Review 8.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

9.  A genetic network that balances two outcomes utilizes asymmetric recognition of operator sites.

Authors:  Abhishek Mazumder; Sumita Bandyopadhyay; Amlanjyoti Dhar; Dale E A Lewis; Sunanda Deb; Sucharita Dey; Pinak Chakrabarti; Siddhartha Roy
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

10.  Mechanism by which the IFN-beta enhanceosome activates transcription.

Authors:  J Yie; K Senger; D Thanos
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

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