Literature DB >> 9757109

Continuous and discontinuous changes in the unit cell of HIV-1 reverse transcriptase crystals on dehydration.

R M Esnouf1, J Ren, E F Garman, D O Somers, C K Ross, E Y Jones, D K Stammers, D I Stuart.   

Abstract

A crystal form of HIV-1 reverse transcriptase (RT) complexed with inhibitors showed diffraction to a high-resolution limit of 3.7 A. Instability in the unit-cell dimensions of these crystals was observed during soaking experiments, but the range of this variability and consequent change in lattice order was revealed by a chance observation of dehydration. Deliberately induced dehydration results in crystals having a variety of unit cells, the best-ordered of which show diffraction to a minimum Bragg spacing of 2.2 A. In order to understand the molecular basis for this phenomenon, the initial observation of dehydration, the data sets from dehydrated crystals, the crystal packing and the domain conformation of RT are analysed in detail here. This analysis reveals that the crystals undergo remarkable changes following a variety of possible dehydration pathways: some changes occur gradually whilst others are abrupt and require significant domain rearrangements. Comparison of domain arrangements in different crystal forms gives insight into the flexibility of RT which, in turn, may reflect the internal motions allowing this therapeutically important enzyme to fulfill its biological function.

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Year:  1998        PMID: 9757109     DOI: 10.1107/s0907444998004284

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  21 in total

1.  Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors.

Authors:  J Ren; L E Bird; P P Chamberlain; G B Stewart-Jones; D I Stuart; D K Stammers
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-17       Impact factor: 11.205

2.  Improving diffraction resolution using a new dehydration method.

Authors:  Qingqiu Huang; Doletha M E Szebenyi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-28       Impact factor: 1.056

3.  Crystal structure of the dengue virus RNA-dependent RNA polymerase catalytic domain at 1.85-angstrom resolution.

Authors:  Thai Leong Yap; Ting Xu; Yen-Liang Chen; Helene Malet; Marie-Pierre Egloff; Bruno Canard; Subhash G Vasudevan; Julien Lescar
Journal:  J Virol       Date:  2007-02-14       Impact factor: 5.103

4.  A multi-step strategy to obtain crystals of the dengue virus RNA-dependent RNA polymerase that diffract to high resolution.

Authors:  Thai Leong Yap; Yen Liang Chen; Ting Xu; Daying Wen; Subhash G Vasudevan; Julien Lescar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-17

5.  Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.

Authors:  Matthew Warkentin; Jesse B Hopkins; Jonah B Haber; Gregor Blaha; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

6.  An autoinhibited structure of α-catenin and its implications for vinculin recruitment to adherens junctions.

Authors:  Noboru Ishiyama; Nobutoshi Tanaka; Kentaro Abe; Yoo Jeong Yang; Yazan M Abbas; Masataka Umitsu; Bhushan Nagar; Stephanie A Bueler; John L Rubinstein; Masatoshi Takeichi; Mitsuhiko Ikura
Journal:  J Biol Chem       Date:  2013-04-15       Impact factor: 5.157

7.  Improved X-ray diffraction from Bacillus megaterium penicillin G acylase crystals through long cryosoaking dehydration.

Authors:  Catleya Rojviriya; Thunyaluck Pratumrat; Mark A Saper; Jirundon Yuvaniyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-26

8.  Crystal structures of Zidovudine- or Lamivudine-resistant human immunodeficiency virus type 1 reverse transcriptases containing mutations at codons 41, 184, and 215.

Authors:  P P Chamberlain; J Ren; C E Nichols; L Douglas; J Lennerstrand; B A Larder; D I Stuart; D K Stammers
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

9.  Nonnucleoside inhibitor binding affects the interactions of the fingers subdomain of human immunodeficiency virus type 1 reverse transcriptase with DNA.

Authors:  Elena N Peletskaya; Alex A Kogon; Steven Tuske; Edward Arnold; Stephen H Hughes
Journal:  J Virol       Date:  2004-04       Impact factor: 5.103

10.  Humidity control as a strategy for lattice optimization applied to crystals of HLA-A*1101 complexed with variant peptides from dengue virus.

Authors:  Pojchong Chotiyarnwong; Guillaume B Stewart-Jones; Michael J Tarry; Wanwisa Dejnirattisai; Christian Siebold; Michael Koch; David I Stuart; Karl Harlos; Prida Malasit; Gavin Screaton; Juthathip Mongkolsapaya; E Yvonne Jones
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06
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