Literature DB >> 17565177

Humidity control as a strategy for lattice optimization applied to crystals of HLA-A*1101 complexed with variant peptides from dengue virus.

Pojchong Chotiyarnwong1, Guillaume B Stewart-Jones, Michael J Tarry, Wanwisa Dejnirattisai, Christian Siebold, Michael Koch, David I Stuart, Karl Harlos, Prida Malasit, Gavin Screaton, Juthathip Mongkolsapaya, E Yvonne Jones.   

Abstract

T-cell recognition of the antigenic peptides presented by MHC class I molecules normally triggers protective immune responses, but can result in immune enhancement of disease. Cross-reactive T-cell responses may underlie immunopathology in dengue haemorrhagic fever. To analyze these effects at the molecular level, the functional MHC class I molecule HLA-A*1101 was crystallized bound to six naturally occurring peptide variants from the dengue virus NS3 protein. The crystals contained high levels of solvent and required optimization of the cryoprotectant and dehydration protocols for each complex to yield well ordered diffraction, a process that was facilitated by the use of a free-mounting system.

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Year:  2007        PMID: 17565177      PMCID: PMC2334998          DOI: 10.1107/S1744309107013693

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Crystallization and preliminary X-ray crystallographic studies of HLA-A*1101 complexed with an HIV-1 decapeptide.

Authors:  Lenong Li; Nattawan Promadej; Janet M McNicholl; Marlene Bouvier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-06-20

Review 2.  Post-crystallization treatments for improving diffraction quality of protein crystals.

Authors:  Begoña Heras; Jennifer L Martin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16

3.  Epidemiologic studies on Dengue in Santiago de Cuba, 1997.

Authors:  M G Guzmán; G Kouri; L Valdes; J Bravo; M Alvarez; S Vazques; I Delgado; S B Halstead
Journal:  Am J Epidemiol       Date:  2000-11-01       Impact factor: 4.897

4.  Crystal structure of protoporphyrinogen IX oxidase: a key enzyme in haem and chlorophyll biosynthesis.

Authors:  Michael Koch; Constanze Breithaupt; Reiner Kiefersauer; Jörg Freigang; Robert Huber; Albrecht Messerschmidt
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

5.  T cell responses in dengue hemorrhagic fever: are cross-reactive T cells suboptimal?

Authors:  Juthathip Mongkolsapaya; Thaneeya Duangchinda; Wanwisa Dejnirattisai; Sirijit Vasanawathana; Panisadee Avirutnan; Aroonroong Jairungsri; Nuanpan Khemnu; Nattaya Tangthawornchaikul; Pojchong Chotiyarnwong; Kanokwan Sae-Jang; Michael Koch; Yvonne Jones; Andrew McMichael; Xiaoning Xu; Prida Malasit; Gavin Screaton
Journal:  J Immunol       Date:  2006-03-15       Impact factor: 5.422

6.  Structures of HLA-A*1101 complexed with immunodominant nonamer and decamer HIV-1 epitopes clearly reveal the presence of a middle, secondary anchor residue.

Authors:  Lenong Li; Marlene Bouvier
Journal:  J Immunol       Date:  2004-05-15       Impact factor: 5.422

7.  Original antigenic sin and apoptosis in the pathogenesis of dengue hemorrhagic fever.

Authors:  Juthathip Mongkolsapaya; Wanwisa Dejnirattisai; Xiao-ning Xu; Sirijitt Vasanawathana; Nattaya Tangthawornchaikul; Aroonrung Chairunsri; Siraporn Sawasdivorn; Thaneeya Duangchinda; Tao Dong; Sarah Rowland-Jones; Pa-thai Yenchitsomanus; Andrew McMichael; Prida Malasit; Gavin Screaton
Journal:  Nat Med       Date:  2003-07       Impact factor: 53.440

8.  Structure determination of human semaphorin 4D as an example of the use of MAD in non-optimal cases.

Authors:  Robert M Esnouf; Christopher A Love; Karl Harlos; David I Stuart; E Yvonne Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  High-resolution structure of HLA-A*1101 in complex with SARS nucleocapsid peptide.

Authors:  Thomas Blicher; Jette Sandholm Kastrup; Søren Buus; Michael Gajhede
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

10.  A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization.

Authors:  Thomas S Walter; Jonathan M Diprose; Chris J Mayo; Christian Siebold; Mike G Pickford; Lester Carter; Geoff C Sutton; Nick S Berrow; James Brown; Ian M Berry; Guillaume B E Stewart-Jones; Jonathan M Grimes; David K Stammers; Robert M Esnouf; E Yvonne Jones; Ray J Owens; David I Stuart; Karl Harlos
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-05-26
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  5 in total

1.  Memory CD8+ T cells from naturally acquired primary dengue virus infection are highly cross-reactive.

Authors:  Heather Friberg; Lynne Burns; Marcia Woda; Siripen Kalayanarooj; Timothy P Endy; Henry A F Stephens; Sharone Green; Alan L Rothman; Anuja Mathew
Journal:  Immunol Cell Biol       Date:  2010-04-27       Impact factor: 5.126

2.  Crystallization, dehydration and experimental phasing of WbdD, a bifunctional kinase and methyltransferase from Escherichia coli O9a.

Authors:  Gregor Hagelueken; Hexian Huang; Karl Harlos; Bradley R Clarke; Chris Whitfield; James H Naismith
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-09-18

3.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

4.  Identification of conserved and HLA promiscuous DENV3 T-cell epitopes.

Authors:  Eduardo J M Nascimento; Robbie B Mailliard; Asif M Khan; John Sidney; Alessandro Sette; Nicole Guzman; Michael Paulaitis; Andréa Barbosa de Melo; Marli T Cordeiro; Laura V G Gil; Françoir Lemonnier; Charles Rinaldo; J Thomas August; Ernesto T A Marques
Journal:  PLoS Negl Trop Dis       Date:  2013-10-10

5.  IR laser-induced protein crystal transformation.

Authors:  Reiner Kiefersauer; Brigitte Grandl; Stephan Krapp; Robert Huber
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-26
  5 in total

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