Literature DB >> 17632062

Probing the limits to positional information.

Thomas Gregor1, David W Tank, Eric F Wieschaus, William Bialek.   

Abstract

The reproducibility and precision of biological patterning is limited by the accuracy with which concentration profiles of morphogen molecules can be established and read out by their targets. We consider four measures of precision for the Bicoid morphogen in the Drosophila embryo: the concentration differences that distinguish neighboring cells, the limits set by the random arrival of Bicoid molecules at their targets (which depends on absolute concentration), the noise in readout of Bicoid by the activation of Hunchback, and the reproducibility of Bicoid concentration at corresponding positions in multiple embryos. We show, through a combination of different experiments, that all of these quantities are approximately 10%. This agreement among different measures of accuracy indicates that the embryo is not faced with noisy input signals and readout mechanisms; rather, the system exerts precise control over absolute concentrations and responds reliably to small concentration differences, approaching the limits set by basic physical principles.

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Year:  2007        PMID: 17632062      PMCID: PMC2253670          DOI: 10.1016/j.cell.2007.05.025

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  42 in total

1.  Embryonic pattern scaling achieved by oppositely directed morphogen gradients.

Authors:  Peter McHale; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Biol       Date:  2006-05-16       Impact factor: 2.583

2.  Stability and nuclear dynamics of the bicoid morphogen gradient.

Authors:  Thomas Gregor; Eric F Wieschaus; Alistair P McGregor; William Bialek; David W Tank
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

3.  Two-photon laser scanning fluorescence microscopy.

Authors:  W Denk; J H Strickler; W W Webb
Journal:  Science       Date:  1990-04-06       Impact factor: 47.728

Review 4.  Physical limits to sensation and perception.

Authors:  W Bialek
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

5.  A gradient of bicoid protein in Drosophila embryos.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

6.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

7.  The Ferrier Lecture, 1980. Critical limiting factors in the design of the eye and visual cortex.

Authors:  H B Barlow
Journal:  Proc R Soc Lond B Biol Sci       Date:  1981-05-07

8.  The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Nature       Date:  1989-01-12       Impact factor: 49.962

9.  Analysis of pattern precision shows that Drosophila segmentation develops substantial independence from gradients of maternal gene products.

Authors:  David M Holloway; Lionel G Harrison; David Kosman; Carlos E Vanario-Alonso; Alexander V Spirov
Journal:  Dev Dyn       Date:  2006-11       Impact factor: 3.780

10.  The gradient morphogen bicoid is a concentration-dependent transcriptional activator.

Authors:  G Struhl; K Struhl; P M Macdonald
Journal:  Cell       Date:  1989-06-30       Impact factor: 41.582

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  279 in total

1.  Negative feedback in the bone morphogenetic protein 4 (BMP4) synexpression group governs its dynamic signaling range and canalizes development.

Authors:  Malte Paulsen; Stefan Legewie; Roland Eils; Emil Karaulanov; Christof Niehrs
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-01       Impact factor: 11.205

Review 2.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

3.  Coding design of positional information for robust morphogenesis.

Authors:  Yoshihiro Morishita; Yoh Iwasa
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

4.  A data-integrated method for analyzing stochastic biochemical networks.

Authors:  Michael W Chevalier; Hana El-Samad
Journal:  J Chem Phys       Date:  2011-12-07       Impact factor: 3.488

5.  A "lookup table" schema for synthetic biological patterning.

Authors:  Frederick B Reitz
Journal:  Theory Biosci       Date:  2012-02-17       Impact factor: 1.919

6.  Examining the dynamics of chromosomal passenger complex (CPC)-dependent phosphorylation during cell division.

Authors:  Lei Tan; Tarun M Kapoor
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

7.  The effect of the signalling scheme on the robustness of pattern formation in development.

Authors:  Hye-Won Kang; Likun Zheng; Hans G Othmer
Journal:  Interface Focus       Date:  2012-03-21       Impact factor: 3.906

8.  Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos.

Authors:  David Cheung; Cecelia Miles; Martin Kreitman; Jun Ma
Journal:  Development       Date:  2013-11-27       Impact factor: 6.868

9.  Anterior-posterior positional information in the absence of a strong Bicoid gradient.

Authors:  Amanda Ochoa-Espinosa; Danyang Yu; Aristotelis Tsirigos; Paolo Struffi; Stephen Small
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

10.  LlamaTags: A Versatile Tool to Image Transcription Factor Dynamics in Live Embryos.

Authors:  Jacques P Bothma; Matthew R Norstad; Simon Alamos; Hernan G Garcia
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

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