Literature DB >> 9728756

New reference allelic ladders to improve allelic designation in a multiplex STR system.

R A Griffiths1, M D Barber, P E Johnson, S M Gillbard, M D Haywood, C D Smith, J Arnold, T Burke, A J Urquhart, P Gill.   

Abstract

This paper reports the composition of a new reference allelic ladder mixture for use with a multiplex DNA profiling system consisting of six short tandem repeat loci. The loci included in this mixture are HUMTH01, D21S11, D18S51, D8S1179, HUMVWAF31/A, HUMFIBRA/FGA and an amelogenin sex test. Sequence analysis of individual ladder alleles was carried out and allelic designations made in accordance with the recommendations of the International Society of Forensic Haemogenetics (1992; 1994). A series of rare alleles which increase the range of alleles previously reported were identified. By including some of the rare alleles into the ladder marker system, we have significantly improved the ability to identify new alleles in unknown samples.

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Year:  1998        PMID: 9728756     DOI: 10.1007/s004140050167

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  17 in total

1.  Toward high-throughput genotyping: dynamic and automatic software for manipulating large-scale genotype data using fluorescently labeled dinucleotide markers.

Authors:  J L Li; H Deng; D B Lai; F Xu; J Chen; G Gao; R R Recker; H W Deng
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

2.  A tale of two genotypes: consistency between two high-throughput genotyping centers.

Authors:  Daniel E Weeks; Yvette P Conley; Robert E Ferrell; Tammy S Mah; Michael B Gorin
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

3.  Development of a 13-locus PCR multiplex system for paternity testing.

Authors:  J Schlenk; S Seidl; G Braunschweiger; P Betz; T Lederer
Journal:  Int J Legal Med       Date:  2004-01-14       Impact factor: 2.686

4.  Multicenter collaborative study for standardization of Candida albicans genotyping using a polymorphic microsatellite marker.

Authors:  Dea Garcia-Hermoso; Donna M MacCallum; Timothy J Lott; Paula Sampaio; Maria-José Buitrago Serna; Fréderic Grenouillet; Corné H W Klaassen; Stéphane Bretagne
Journal:  J Clin Microbiol       Date:  2010-04-28       Impact factor: 5.948

5.  A cautionary tale: Lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system.

Authors:  Alessandro C Pasqualotto; David W Denning; Michael J Anderson
Journal:  J Clin Microbiol       Date:  2006-12-13       Impact factor: 5.948

6.  Variant alleles, triallelic patterns, and point mutations observed in nuclear short tandem repeat typing of populations in Bosnia and Serbia.

Authors:  René L M Huel; Lara Basić; Kamelija Madacki-Todorović; Lejla Smajlović; Izet Eminović; Irfan Berbić; Ana Milos; Thomas J Parsons
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

7.  Meiosis study in a population sample from Nigeria: allele frequencies and mutation rates of 16 STR loci.

Authors:  Carsten Hohoff; Marianne Schürenkamp; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-01-21       Impact factor: 2.686

8.  Development of new PCR multiplex system by the simultaneous detection of 10 miniSTRs, SE33, Penta E, Penta D, and four Y-STRs.

Authors:  Muhammad Shafique; Muhammad Saqib Shahzad; Ziaur Rahman; Muhammad Adnan Shan; Rukhsana Perveen; Muhammad Shahzad; Manzoor Hussain; Ahmad Ali Shahid; Tayyab Husnain
Journal:  Int J Legal Med       Date:  2016-05-11       Impact factor: 2.686

9.  Characterization of new chloroplast markers to determine biogeographical origin and crop type of Cannabis sativa.

Authors:  Madeline G Roman; David Gangitano; Rachel Houston
Journal:  Int J Legal Med       Date:  2019-08-23       Impact factor: 2.686

10.  A hypervariable STR polymorphism in the complement factor I (CFI) gene: Asian-specific alleles.

Authors:  Isao Yuasa; Yoshito Irizawa; Hiroaki Nishimukai; Yasuo Fukumori; Kazuo Umetsu; Nori Nakayashiki; Naruya Saitou; Lotte Henke; Jürgen Henke
Journal:  Int J Legal Med       Date:  2009-08-20       Impact factor: 2.686

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