Literature DB >> 20427694

Multicenter collaborative study for standardization of Candida albicans genotyping using a polymorphic microsatellite marker.

Dea Garcia-Hermoso1, Donna M MacCallum, Timothy J Lott, Paula Sampaio, Maria-José Buitrago Serna, Fréderic Grenouillet, Corné H W Klaassen, Stéphane Bretagne.   

Abstract

Microsatellite-based genotyping for Candida albicans can give discrepant results between laboratories when expressed in fragment sizes, because their determination depends on electrophoretic conditions. The interlaboratory reproducibility was assessed in six laboratories provided with an allelic ladder. Despite variations in size determinations, alleles were correctly assigned, making data transportable between laboratories.

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Year:  2010        PMID： 20427694      PMCID： PMC2897530          DOI： 10.1128/JCM.00040-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  21 in total

1.  Sequenced allelic ladders and population genetics of a new STR multiplex system.

Authors:  S Watson; R Allsop; L Foreman; Z Kelsey; P Gill
Journal:  Forensic Sci Int       Date:  2001-01-15       Impact factor: 2.395

2.  Allelic ladder characterization of the short tandem repeat polymorphism in intron 6 of the lipoprotein lipase gene and its application in an Austrian Caucasian population study.

Authors:  B Glock; D W Schwartz; E M Schwartz-Jungl; W R Mayr
Journal:  J Forensic Sci       Date:  1996-07       Impact factor: 1.832

3.  Molecular diversity and routes of colonization of Candida albicans in a surgical intensive care unit, as studied using microsatellite markers.

Authors:  François Stéphan; Mamadou Sialou Bah; Christophe Desterke; Saïda Rézaiguia-Delclaux; Françoise Foulet; Philippe Duvaldestin; Stéphane Bretagne
Journal:  Clin Infect Dis       Date:  2002-12-04       Impact factor: 9.079

4.  Analysis of microsatellite markers of Candida albicans used for rapid typing.

Authors:  F Botterel; C Desterke; C Costa; S Bretagne
Journal:  J Clin Microbiol       Date:  2001-11       Impact factor: 5.948

5.  Identification of repeat sequence heterogeneity at the polymorphic short tandem repeat locus HUMTH01[AATG]n and reassignment of alleles in population analysis by using a locus-specific allelic ladder.

Authors:  C Puers; H A Hammond; L Jin; C T Caskey; J W Schumm
Journal:  Am J Hum Genet       Date:  1993-10       Impact factor: 11.025

6.  A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli.

Authors:  C S Hoffman; F Winston
Journal:  Gene       Date:  1987       Impact factor: 3.688

7.  Analysis of polymorphic microsatellite markers for typing Penicillium marneffei isolates.

Authors:  Brent A Lasker; Yuping Ran
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

8.  Microsatellite markers for typing Aspergillus fumigatus isolates.

Authors:  E Bart-Delabesse; J F Humbert; E Delabesse; S Bretagne
Journal:  J Clin Microbiol       Date:  1998-09       Impact factor: 5.948

Review 9.  Which genetic marker for which conservation genetics issue?

Authors:  Qiu-Hong Wan; Hua Wu; Tsutomu Fujihara; Sheng-Guo Fang
Journal:  Electrophoresis       Date:  2004-07       Impact factor: 3.535

10.  Interlaboratory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept.

Authors:  H A de Valk; J F G M Meis; S Bretagne; J-M Costa; B A Lasker; S A Balajee; A C Pasqualotto; M J Anderson; L Alcázar-Fuoli; E Mellado; C H W Klaassen
Journal:  Clin Microbiol Infect       Date:  2009-01-10       Impact factor: 8.067
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  6 in total

Review 1.  Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

Authors:  Alexandre Alanio; Marie Desnos-Ollivier; Dea Garcia-Hermoso; Stéphane Bretagne
Journal:  Clin Microbiol Rev       Date:  2017-07       Impact factor: 26.132

2.  Candida spp. with acquired echinocandin resistance, France, 2004-2010.

Authors:  Eric Dannaoui; Marie Desnos-Ollivier; Dea Garcia-Hermoso; Fredéric Grenouillet; Sophie Cassaing; Marie-Thérèse Baixench; Stéphane Bretagne; Françoise Dromer; Olivier Lortholary
Journal:  Emerg Infect Dis       Date:  2012-01       Impact factor: 6.883

3.  New Short Tandem Repeat-Based Molecular Typing Method for Pneumocystis jirovecii Reveals Intrahospital Transmission between Patients from Different Wards.

Authors:  Maud Gits-Muselli; Marie-Noelle Peraldi; Nathalie de Castro; Véronique Delcey; Jean Menotti; Nicolas Guigue; Samia Hamane; Emmanuel Raffoux; Anne Bergeron; Sandrine Valade; Jean-Michel Molina; Stéphane Bretagne; Alexandre Alanio
Journal:  PLoS One       Date:  2015-05-01       Impact factor: 3.240

4.  Multilocus microsatellite markers for molecular typing of Candida tropicalis isolates.

Authors:  Yuan Wu; Hai-jian Zhou; Jie Che; Wen-ge Li; Fu-ning Bian; Shuan-bao Yu; Li-juan Zhang; Jinxing Lu
Journal:  BMC Microbiol       Date:  2014-11-20       Impact factor: 3.605

5.  Analysis of strain relatedness using high resolution melting in a case of recurrent candiduria.

Authors:  Sara Gago; Belen Lorenzo; Alicia Gomez-Lopez; Isabel Cuesta; Manuel Cuenca-Estrella; Maria J Buitrago
Journal:  BMC Microbiol       Date:  2013-01-23       Impact factor: 3.605

Review 6.  Molecular fingerprints to identify Candida species.

Authors:  Claudia Spampinato; Darío Leonardi
Journal:  Biomed Res Int       Date:  2013-06-17       Impact factor: 3.411
  6 in total

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