Literature DB >> 9724717

A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator.

S Rhee1, R G Martin, J L Rosner, D R Davies.   

Abstract

A crystal structure for a member of the AraC prokaryotic transcriptional activator family, MarA, in complex with its cognate DNA-binding site is described. MarA consists of two similar subdomains, each containing a helix-turn-helix DNA-binding motif. The two recognition helices of the motifs are inserted into adjacent major groove segments on the same face of the DNA but are separated by only 27 A thereby bending the DNA by approximately 35 degrees. Extensive interactions between the recognition helices and the DNA major groove provide the sequence specificity.

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Year:  1998        PMID: 9724717      PMCID: PMC27908          DOI: 10.1073/pnas.95.18.10413

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.

Authors:  E M Jacobson; P Li; A Leon-del-Rio; M G Rosenfeld; A K Aggarwal
Journal:  Genes Dev       Date:  1997-01-15       Impact factor: 11.361

3.  The XylS/AraC family of regulators.

Authors:  M T Gallegos; C Michán; J L Ramos
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

4.  Genetic definition of the Escherichia coli zwf "soxbox," the DNA binding site for SoxS-mediated induction of glucose 6-phosphate dehydrogenase in response to superoxide.

Authors:  W P Fawcett; R E Wolf
Journal:  J Bacteriol       Date:  1995-04       Impact factor: 3.490

5.  Activation of multiple antibiotic resistance and binding of stress-inducible promoters by Escherichia coli Rob protein.

Authors:  R R Ariza; Z Li; N Ringstad; B Demple
Journal:  J Bacteriol       Date:  1995-04       Impact factor: 3.490

6.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

7.  Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules.

Authors:  J D Klemm; M A Rould; R Aurora; W Herr; C O Pabo
Journal:  Cell       Date:  1994-04-08       Impact factor: 41.582

8.  SoxS, an activator of superoxide stress genes in Escherichia coli. Purification and interaction with DNA.

Authors:  Z Li; B Demple
Journal:  J Biol Chem       Date:  1994-07-15       Impact factor: 5.157

9.  Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli.

Authors:  S P Cohen; H Hächler; S B Levy
Journal:  J Bacteriol       Date:  1993-03       Impact factor: 3.490

Review 10.  Interactions of protein antigens with antibodies.

Authors:  D R Davies; G H Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

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  115 in total

1.  Type III secretion chaperone-dependent regulation: activation of virulence genes by SicA and InvF in Salmonella typhimurium.

Authors:  K H Darwin; V L Miller
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

2.  Functional domains of the TOL plasmid transcription factor XylS.

Authors:  N Kaldalu; U Toots; V de Lorenzo; M Ustav
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

3.  Novel group of virulence activators within the AraC family that are not restricted to upstream binding sites.

Authors:  G P Munson; L G Holcomb; J R Scott
Journal:  Infect Immun       Date:  2001-01       Impact factor: 3.441

4.  Transcription activation by a variety of AraC/XylS family activators does not depend on the class II-specific activation determinant in the N-terminal domain of the RNA polymerase alpha subunit.

Authors:  S M Egan; A J Pease; J Lang; X Li; V Rao; W K Gillette; R Ruiz; J L Ramos; R E Wolf
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

5.  Genetic evidence that transcription activation by RhaS involves specific amino acid contacts with sigma 70.

Authors:  P M Bhende; S M Egan
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

6.  Two tricks in one bundle: helix-turn-helix gains enzymatic activity.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

7.  AraC-XylS database: a family of positive transcriptional regulators in bacteria.

Authors:  Raquel Tobes; Juan L Ramos
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons.

Authors:  Nikolaus Rajewsky; Nicholas D Socci; Martin Zapotocky; Eric D Siggia
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

9.  Posttranscriptional activation of the transcriptional activator Rob by dipyridyl in Escherichia coli.

Authors:  Judah L Rosner; Bindi Dangi; Angela M Gronenborn; Robert G Martin
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

10.  DNA binding of the transcription activator protein MelR from Escherichia coli and its C-terminal domain.

Authors:  Victoria J Howard; Tamara A Belyaeva; Stephen J W Busby; Eva I Hyde
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

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