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Literature DB >> 11752325

AraC-XylS database: a family of positive transcriptional regulators in bacteria.

Abstract

The AraC-XylS database contains information about a family of positive transcriptional regulators broadly distributed in bacteria. This specific database focuses on protein sequences and on the biological and functional features of each of the proteins that belong to this family. Each entry provides information on the protein itself, the annotated protein sequence and, when the crystal is available, a comprehensive representation of its three-dimensional structure. The organization of the database is based on an exhaustive analysis of the scientific literature. The data are interconnected and linked with other databases. Multiple alignments of the members of the family, an extensive collection of references and a tutorial about the family provide additional information. The AraC-XylS database is accessible on the World Wide Web at http://www.AraC-XylS.org.

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Year: 2002 PMID： 11752325 PMCID： PMC99111 DOI： 10.1093/nar/30.1.318

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

16 in total

1. The Comprehensive Microbial Resource.

Authors: J D Peterson; L A Umayam; T Dickinson; E K Hickey; O White
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.

Authors: H Salgado; A Santos-Zavaleta; S Gama-Castro; D Millán-Zárate; E Díaz-Peredo; F Sánchez-Solano; E Pérez-Rueda; C Bonavides-Martínez; J Collado-Vides
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

Review 3. Responses of Gram-negative bacteria to certain environmental stressors.

Authors: J L Ramos; M T Gallegos; S Marqués; M I Ramos-González; M Espinosa-Urgel; A Segura
Journal: Curr Opin Microbiol Date: 2001-04 Impact factor: 7.934

4. Cooperative action of the catabolite activator protein and AraC in vitro at the araFGH promoter.

Authors: C M Johnson; R F Schleif
Journal: J Bacteriol Date: 2000-04 Impact factor: 3.490

5. Interactions of the XylS regulators with the C-terminal domain of the RNA polymerase alpha subunit influence the expression level from the cognate Pm promoter.

Authors: R Ruiz; J L Ramos; S M Egan
Journal: FEBS Lett Date: 2001-03-02 Impact factor: 4.124

6. A family of positive regulators related to the Pseudomonas putida TOL plasmid XylS and the Escherichia coli AraC activators.

Authors: J L Ramos; F Rojo; L Zhou; K N Timmis
Journal: Nucleic Acids Res Date: 1990-04-25 Impact factor: 16.971

7. Roles of cyclic AMP receptor protein and the carboxyl-terminal domain of the alpha subunit in transcription activation of the Escherichia coli rhaBAD operon.

Authors: C C Holcroft; S M Egan
Journal: J Bacteriol Date: 2000-06 Impact factor: 3.490

8. DBTBS: a database of Bacillus subtilis promoters and transcription factors.

Authors: T Ishii; K Yoshida; G Terai; Y Fujita; K Nakai
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

9. PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites.

Authors: R Hershberg; G Bejerano; A Santos-Zavaleta; H Margalit
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

10. Combined physical and genetic map of the Pseudomonas putida KT2440 chromosome.

Authors: M A Ramos-Díaz; J L Ramos
Journal: J Bacteriol Date: 1998-12 Impact factor: 3.490

56 in total

1. To build a biofilm.

Authors: George A O'Toole
Journal: J Bacteriol Date: 2003-05 Impact factor: 3.490

Review 2. Two-component signal transduction in Enterococcus faecalis.

Authors: Lynn Hancock; Marta Perego
Journal: J Bacteriol Date: 2002-11 Impact factor: 3.490

3. SoxRS down-regulation of rob transcription.

Authors: Carmen Michán; Manuel Manchado; Carmen Pueyo
Journal: J Bacteriol Date: 2002-09 Impact factor: 3.490

4. In vivo and in vitro evidence that TtgV is the specific regulator of the TtgGHI multidrug and solvent efflux pump of Pseudomonas putida.

Authors: Antonia Rojas; Ana Segura; María Eugenia Guazzaroni; Wilson Terán; Ana Hurtado; María Trinidad Gallegos; Juan L Ramos
Journal: J Bacteriol Date: 2003-08 Impact factor: 3.490

Review 5. Bacterial transcriptional regulators for degradation pathways of aromatic compounds.

Authors: David Tropel; Jan Roelof van der Meer
Journal: Microbiol Mol Biol Rev Date: 2004-09 Impact factor: 11.056

Review 6. Charting gene regulatory networks: strategies, challenges and perspectives.

Authors: Gong-Hong Wei; De-Pei Liu; Chih-Chuan Liang
Journal: Biochem J Date: 2004-07-01 Impact factor: 3.857

Review 7. The TetR family of transcriptional repressors.

Authors: Juan L Ramos; Manuel Martínez-Bueno; Antonio J Molina-Henares; Wilson Terán; Kazuya Watanabe; Xiaodong Zhang; María Trinidad Gallegos; Richard Brennan; Raquel Tobes
Journal: Microbiol Mol Biol Rev Date: 2005-06 Impact factor: 11.056

8. Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria.

Authors: Tijs J M van den Bosch; Kemin Tan; Andrzej Joachimiak; Cornelia U Welte
Journal: Appl Environ Microbiol Date: 2018-07-02 Impact factor: 4.792

9. Leucines 193 and 194 at the N-terminal domain of the XylS protein, the positive transcriptional regulator of the TOL meta-cleavage pathway, are involved in dimerization.

Authors: Raquel Ruíz; Silvia Marqués; Juan L Ramos
Journal: J Bacteriol Date: 2003-05 Impact factor: 3.490

10. 2,5-dialkylresorcinol biosynthesis in Pseudomonas aurantiaca: novel head-to-head condensation of two fatty acid-derived precursors.

Authors: Brian Nowak-Thompson; Philip E Hammer; D Steven Hill; Jill Stafford; Nancy Torkewitz; Thomas D Gaffney; Stephen T Lam; István Molnár; James M Ligon
Journal: J Bacteriol Date: 2003-02 Impact factor: 3.490