Literature DB >> 9685488

Fluorescent dyes specific for quadruplex DNA.

H Arthanari1, S Basu, T L Kawano, P H Bolton.   

Abstract

Fluorescent dyes which are specific for duplex DNA have found a wide range of applications from staining gels to visualization of chromosomes. Porphyrin dyes have been found which are highly fluorescent in the presence of quadruplex but not duplex DNA. These dyes may offer a route to the specific detection of quadruplex DNA under biologically important conditions. There are three types of DNA quadruplex structures, and these may play important roles in telomere, centromere, triplet repeat, integration sites and other DNAs, and this first set of porphyrin dyes show some selectivity between the quadruplex types.

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Year:  1998        PMID： 9685488      PMCID： PMC147777          DOI： 10.1093/nar/26.16.3724

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  42 in total

1.  Ion selective folding of loop domains in a potent anti-HIV oligonucleotide.

Authors:  N Jing; R F Rando; Y Pommier; M E Hogan
Journal:  Biochemistry       Date:  1997-10-14       Impact factor: 3.162

2.  The tertiary structure of a DNA aptamer which binds to and inhibits thrombin determines activity.

Authors:  K Y Wang; S H Krawczyk; N Bischofberger; S Swaminathan; P H Bolton
Journal:  Biochemistry       Date:  1993-10-26       Impact factor: 3.162

3.  The beta subunit of Oxytricha telomere-binding protein promotes G-quartet formation by telomeric DNA.

Authors:  G Fang; T R Cech
Journal:  Cell       Date:  1993-09-10       Impact factor: 41.582

4.  Induction of DNA damage by porphyrin photosensitizers.

Authors:  R J Fiel; N Datta-Gupta; E H Mark; J C Howard
Journal:  Cancer Res       Date:  1981-09       Impact factor: 12.701

5.  Interaction of the dye ethidium bromide with DNA containing guanine repeats.

Authors:  Q Guo; M Lu; L A Marky; N R Kallenbach
Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

6.  Quadruplex structure of Oxytricha telomeric DNA oligonucleotides.

Authors:  F W Smith; J Feigon
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

7.  Characterization of a G-quartet formation reaction promoted by the beta-subunit of the Oxytricha telomere-binding protein.

Authors:  G Fang; T R Cech
Journal:  Biochemistry       Date:  1993-11-02       Impact factor: 3.162

8.  Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution.

Authors:  R F Macaya; P Schultze; F W Smith; J A Roe; J Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

9.  Cation-dependent transition between the quadruplex and Watson-Crick hairpin forms of d(CGCG3GCG).

Authors:  C C Hardin; T Watson; M Corregan; C Bailey
Journal:  Biochemistry       Date:  1992-01-28       Impact factor: 3.162

10.  Solution structure of a parallel-stranded G-quadruplex DNA.

Authors:  Y Wang; D J Patel
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469
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  60 in total

1.  A DNA-porphyrin minor-groove complex at atomic resolution: the structural consequences of porphyrin ruffling.

Authors:  M Bennett; A Krah; F Wien; E Garman; R McKenna; M Sanderson; S Neidle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

Review 2.  Natural and pharmacological regulation of telomerase.

Authors:  Jean-Louis Mergny; Jean-François Riou; Patrick Mailliet; Marie-Paule Teulade-Fichou; Eric Gilson
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

3.  Cell senescence and telomere shortening induced by a new series of specific G-quadruplex DNA ligands.

Authors:  J F Riou; L Guittat; P Mailliet; A Laoui; E Renou; O Petitgenet; F Mégnin-Chanet; C Hélène; J L Mergny
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

4.  Tiny telomere DNA.

Authors:  Jinsong Ren; Xiaogang Qu; John O Trent; Jonathan B Chaires
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

5.  G4 DNA unwinding by BLM and Sgs1p: substrate specificity and substrate-specific inhibition.

Authors:  Michael D Huber; Damian C Lee; Nancy Maizels
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

6.  In vitro selection of structure-switching, self-reporting aptamers.

Authors:  Seung Soo Oh; Kory Plakos; Xinhui Lou; Yi Xiao; H Tom Soh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

7.  G-Quadruplex DNA Motifs in the Malaria Parasite Plasmodium falciparum and Their Potential as Novel Antimalarial Drug Targets.

Authors:  Lynne M Harris; Katelyn R Monsell; Florian Noulin; M Toyin Famodimu; Nicolas Smargiasso; Christian Damblon; Paul Horrocks; Catherine J Merrick
Journal:  Antimicrob Agents Chemother       Date:  2018-02-23       Impact factor: 5.191

8.  Use of competition dialysis in the discovery of G-quadruplex selective ligands.

Authors:  Patricia Ragazzon; Jonathan B Chaires
Journal:  Methods       Date:  2007-12       Impact factor: 3.608

9.  A G-quadruplex DNA-based, label-free and ultrasensitive strategy for microRNA detection.

Authors:  Li Yan; Yiyong Yan; Lei Pei; Wei Wei; Jing Zhao
Journal:  Sci Rep       Date:  2014-12-10       Impact factor: 4.379

10.  Mass spectrometric studies on effects of counter ions of TMPyP4 on binding to human telomeric DNA and RNA G-quadruplexes.

Authors:  Li-Ping Bai; Jie Liu; Li Han; Hing-Man Ho; Renxiao Wang; Zhi-Hong Jiang
Journal:  Anal Bioanal Chem       Date:  2014-06-18       Impact factor: 4.142
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