Literature DB >> 25492390

A G-quadruplex DNA-based, label-free and ultrasensitive strategy for microRNA detection.

Li Yan1, Yiyong Yan2, Lei Pei1, Wei Wei3, Jing Zhao3.   

Abstract

MicroRNAs (miRNAs) have been considered to be potent biomarkers for early disease diagnosis and for cancer therapy. The rapid and selective detection of miRNAs without reverse transcription and labelling is highly desired. Herein, we report a simple and label-free miRNA detection method that is based on the Duplex-Specific Nuclease (DSN)-Assisted simple target miRNA recycling procedure. The interaction of the G-quadruplex DNA structure with N-methyl mesoporphyrin IX (NMM) led to a label-free signal output. Under the optimised conditions, this method allowed for simple, rapid, and sequence-specific detection of miR-141 over a dynamic range from 1 fM to 100 nM with a linear range from 1 pM to 100 nM. Moreover, our method offered an excellent capacity to discriminate between miRNA family members with just one mismatched nucleotide. This simple and label-free strategy holds great potential in applications in biomedical research and in early clinical diagnostics.

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Year:  2014        PMID: 25492390      PMCID: PMC4261168          DOI: 10.1038/srep07400

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  37 in total

Review 1.  G-quadruplex DNA: a potential target for anti-cancer drug design.

Authors:  H Han; L H Hurley
Journal:  Trends Pharmacol Sci       Date:  2000-04       Impact factor: 14.819

2.  Identification of novel genes coding for small expressed RNAs.

Authors:  M Lagos-Quintana; R Rauhut; W Lendeckel; T Tuschl
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

3.  bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila.

Authors:  Julius Brennecke; David R Hipfner; Alexander Stark; Robert B Russell; Stephen M Cohen
Journal:  Cell       Date:  2003-04-04       Impact factor: 41.582

Review 4.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

5.  Fluorescent dyes specific for quadruplex DNA.

Authors:  H Arthanari; S Basu; T L Kawano; P H Bolton
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

6.  Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes.

Authors:  Anna Válóczi; Csaba Hornyik; Nóra Varga; József Burgyán; Sakari Kauppinen; Zoltán Havelda
Journal:  Nucleic Acids Res       Date:  2004-12-14       Impact factor: 16.971

7.  Novel amplex red oxidases based on noncanonical DNA structures: property studies and applications in microRNA detection.

Authors:  Shaoru Wang; Boshi Fu; Jiaqi Wang; Yuelin Long; Xiaoe Zhang; Shuang Peng; Pu Guo; Tian Tian; Xiang Zhou
Journal:  Anal Chem       Date:  2014-03-06       Impact factor: 6.986

8.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Authors:  Lee P Lim; Nelson C Lau; Philip Garrett-Engele; Andrew Grimson; Janell M Schelter; John Castle; David P Bartel; Peter S Linsley; Jason M Johnson
Journal:  Nature       Date:  2005-01-30       Impact factor: 49.962

9.  The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism.

Authors:  Peizhang Xu; Stephanie Y Vernooy; Ming Guo; Bruce A Hay
Journal:  Curr Biol       Date:  2003-04-29       Impact factor: 10.834

10.  An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues.

Authors:  Chang-Gong Liu; George Adrian Calin; Brian Meloon; Nir Gamliel; Cinzia Sevignani; Manuela Ferracin; Calin Dan Dumitru; Masayoshi Shimizu; Simona Zupo; Mariella Dono; Hansjuerg Alder; Florencia Bullrich; Massimo Negrini; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

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  2 in total

Review 1.  Emerging Biosensing Approaches for microRNA Analysis.

Authors:  Richard M Graybill; Ryan C Bailey
Journal:  Anal Chem       Date:  2015-12-21       Impact factor: 6.986

2.  Duplex-Specific Nuclease-Amplified Detection of MicroRNA Using Compact Quantum Dot-DNA Conjugates.

Authors:  Ye Wang; Philip D Howes; Eunjung Kim; Christopher D Spicer; Michael R Thomas; Yiyang Lin; Spencer W Crowder; Isaac J Pence; Molly M Stevens
Journal:  ACS Appl Mater Interfaces       Date:  2018-08-16       Impact factor: 9.229

  2 in total

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