Literature DB >> 7920252

Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein.

Y Yan1, B W Erickson.   

Abstract

The betabellin target structure consists of 2 32-residue beta sheets packed against each other by hydrophobic interactions. We have designed, chemically synthesized, and biophysically characterized betabellin 14S, a single chain, and betabellin 14D, the disulfide-bridged double chain. The 32-residue nongenetic betabellin-14 chain (HSLTASIkaLTIHVQakTATCQVkaYTVHISE, a = D-Ala, k = D-Lys) has a palindromic pattern of polar (p), nonpolar (n), end (e), and beta-turn (t,r) residues (epnpnpnttnpnpnprrpnpnpnttnpnpnpe). Each half contains the same 14-residue palindromic pattern (underlined). Pairs of D-amino acid residues are used to favor formation of inverse-common (type-I') beta turns. In water at pH 6.5, the single chain of betabellin 14S is not folded, but the disulfide-linked betabellin 14D is folded into a stable beta-sheet structure. Thus, folding of the covalent dimer beta-bellin 14D is induced by formation of the single interchain disulfide bond. The binary pattern of alternating polar and nonpolar residues of its beta-sheets is not sufficient to induce folding. Betabellin 14D is a very water-soluble (10 mg/mL), small (64 residues), nongenetic (12 D residues) beta-sheet protein with properties (well-dispersed proton NMR resonances; Tm = 58 degrees C and delta Hm = 106 kcal/mol at pH 5.5) like those of a native protein structure.

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Year:  1994        PMID: 7920252      PMCID: PMC2142894          DOI: 10.1002/pro.5560030709

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  10 in total

Review 1.  Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992.

Authors:  J S Richardson; D C Richardson; N B Tweedy; K M Gernert; T P Quinn; M H Hecht; B W Erickson; Y Yan; R D McClain; M E Donlan
Journal:  Biophys J       Date:  1992-11       Impact factor: 4.033

2.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

3.  Designed coiled-coil proteins: synthesis and spectroscopy of two 78-residue alpha-helical dimers.

Authors:  M Engel; R W Williams; B W Erickson
Journal:  Biochemistry       Date:  1991-04-02       Impact factor: 3.162

4.  Design and synthesis of a peptide having chymotrypsin-like esterase activity.

Authors:  K W Hahn; W A Klis; J M Stewart
Journal:  Science       Date:  1990-06-22       Impact factor: 47.728

5.  Re: "Conditions for confounding of the risk ratio and of the odds ratio".

Authors:  D C Thomas
Journal:  Am J Epidemiol       Date:  1986-01       Impact factor: 4.897

6.  A designed metal-binding protein with a novel fold.

Authors:  A Pessi; E Bianchi; A Crameri; S Venturini; A Tramontano; M Sollazzo
Journal:  Nature       Date:  1993-03-25       Impact factor: 49.962

7.  Protein design by binary patterning of polar and nonpolar amino acids.

Authors:  S Kamtekar; J M Schiffer; H Xiong; J M Babik; M H Hecht
Journal:  Science       Date:  1993-12-10       Impact factor: 47.728

8.  Free energies for refolding of the common beta turn into the inverse-common beta turn: simulation of the role of D/L chirality.

Authors:  Y Yan; A Tropsha; J Hermans; B W Erickson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

9.  Protein design using model synthetic peptides.

Authors:  R S Hodges; P D Semchuk; A K Taneja; C M Kay; J M Parker; C T Mant
Journal:  Pept Res       Date:  1988 Sep-Oct

10.  Metal ion-dependent modulation of the dynamics of a designed protein.

Authors:  T M Handel; S A Williams; W F DeGrado
Journal:  Science       Date:  1993-08-13       Impact factor: 47.728

  10 in total
  30 in total

1.  Accommodation of a highly symmetric core within a symmetric protein superfold.

Authors:  Stephen R Brych; Jaewon Kim; Timothy M Logan; Michael Blaber
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

2.  A de novo redesign of the WW domain.

Authors:  Christina M Kraemer-Pecore; Juliette T J Lecomte; John R Desjarlais
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

3.  Effect of hydrophobic core packing on sidechain dynamics.

Authors:  E C Johnson; T M Handel
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

4.  Getting specificity from simplicity in putative proteins from the prebiotic earth.

Authors:  Jaime López de la Osa; David A Bateman; Sylvia Ho; Carlos González; Avijit Chakrabartty; Douglas V Laurents
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-12       Impact factor: 11.205

5.  What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties.

Authors:  M Munson; S Balasubramanian; K G Fleming; A D Nagi; R O'Brien; J M Sturtevant; L Regan
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

6.  A recipe for designing water-soluble, beta-sheet-forming peptides.

Authors:  K H Mayo; E Ilyina; H Park
Journal:  Protein Sci       Date:  1996-07       Impact factor: 6.725

7.  Engineering of betabellin-15D: a 64 residue beta sheet protein that forms long narrow multimeric fibrils.

Authors:  A Lim; M J Saderholm; A M Makhov; M Kroll; Y Yan; L Perera; J D Griffith; B W Erickson
Journal:  Protein Sci       Date:  1998-07       Impact factor: 6.725

8.  Computer simulations of de novo designed helical proteins.

Authors:  A Sikorski; A Kolinski; J Skolnick
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

9.  Design of thiolate rich metal binding sites within a peptidic framework.

Authors:  Marek Łuczkowski; Monika Stachura; Virgil Schirf; Borries Demeler; Lars Hemmingsen; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2008-12-01       Impact factor: 5.165

10.  Chemical synthesis of TASP arrays and their application in protein design.

Authors:  Wolfgang Haehnel
Journal:  Mol Divers       Date:  2004       Impact factor: 2.943

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