Literature DB >> 9683601

Human propionyl-CoA carboxylase beta subunit gene: exon-intron definition and mutation spectrum in Spanish and Latin American propionic acidemia patients.

P Rodríguez-Pombo1, J Hoenicka, S Muro, B Pérez, C Pérez-Cerdá, E Richard, L R Desviat, M Ugarte.   

Abstract

Propionyl-CoA carboxylase (PCC) is a mitochondrial biotin-dependent enzyme composed of an equal number of alpha and beta subunits. Mutations in the PCCA (alpha subunit) or PCCB (beta subunit) gene can cause the inherited metabolic disease propionic acidemia (PA), which can be life threatening in the neonatal period. Lack of data on the genomic structure of PCCB has been a significant impediment to full characterization of PCCB mutant chromosomes. In this study, we describe the genomic organization of the coding sequence of the human PCCB gene and the characterization of mutations causing PA in a total of 29 unrelated patients-21 from Spain and 8 from Latin America. The implementation of long-distance PCR has allowed us to amplify the regions encompassing the exon/intron boundaries and all the exons. The gene consists of 15 exons of 57-183 bp in size. All splice sites are consistent with the gt/ag rule. The availability of the intron sequences flanking each exon has provided the basis for implementation of screening for mutations in the PCCB gene. A total of 56/58 mutant chromosomes studied have been defined, with a total of 16 different mutations detected. The mutation spectrum includes one insertion/deletion, two insertions, 10 missense mutations, one nonsense mutation, and two splicing defects. Thirteen of these mutations correspond to those not described yet in other populations. The mutation profile found in the chromosomes from the Latin American patients basically resembles that of the Spanish patients.

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Year:  1998        PMID: 9683601      PMCID: PMC1377311          DOI: 10.1086/301970

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  30 in total

1.  Survey of amino-terminal proteolytic cleavage sites in mitochondrial precursor proteins: leader peptides cleaved by two matrix proteases share a three-amino acid motif.

Authors:  J P Hendrick; P E Hodges; L E Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

2.  The CpG dinucleotide and human genetic disease.

Authors:  D N Cooper; H Youssoufian
Journal:  Hum Genet       Date:  1988-02       Impact factor: 4.132

3.  An unusual late-onset case of propionic acidaemia: biochemical investigations, neuroradiological findings and mutation analysis.

Authors:  C Pérez-Cerdá; B Merinero; M Martí; J C Cabrera; L Peña; M J García; J Gangoiti; P Sanz; P Rodríguez-Pombo; J Hoenicka; E Richard; S Muro; M Ugarte
Journal:  Eur J Pediatr       Date:  1998-01       Impact factor: 3.183

4.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

5.  Isolation of cDNA clones coding for the alpha and beta chains of human propionyl-CoA carboxylase: chromosomal assignments and DNA polymorphisms associated with PCCA and PCCB genes.

Authors:  A M Lamhonwah; T J Barankiewicz; H F Willard; D J Mahuran; F Quan; R A Gravel
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

6.  RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression.

Authors:  M B Shapiro; P Senapathy
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

7.  Assignment of the alpha and beta chains of human propionyl-CoA carboxylase to genetic complementation groups.

Authors:  A M Lam Hon Wah; K F Lam; F Tsui; B Robinson; M E Saunders; R A Gravel
Journal:  Am J Hum Genet       Date:  1983-09       Impact factor: 11.025

8.  Rapid differential diagnosis of carboxylase deficiencies and evaluation for biotin-responsiveness in a single blood sample.

Authors:  T Suormala; H Wick; J P Bonjour; E R Baumgartner
Journal:  Clin Chim Acta       Date:  1985-01-30       Impact factor: 3.786

9.  Heterozygote expression in propionyl coenzyme A carboxylase deficiency. Differences between major complementation groups.

Authors:  B Wolf; L E Rosenberg
Journal:  J Clin Invest       Date:  1978-11       Impact factor: 14.808

10.  Cloning and screening with nanogram amounts of immunopurified mRNAs: cDNA cloning and chromosomal mapping of cystathionine beta-synthase and the beta subunit of propionyl-CoA carboxylase.

Authors:  J P Kraus; C L Williamson; F A Firgaira; T L Yang-Feng; M Münke; U Francke; L E Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1986-04       Impact factor: 11.205

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  16 in total

1.  Mutations affecting the beta-beta homomeric interaction in propionic acidaemia: an approach to the determination of the beta-propionyl-CoA carboxylase functional domains.

Authors:  S Muro; B Pérez; P Rodríguez-Pombo; L R Desviat; C Pérez-Cerdá; M Ugarte
Journal:  J Inherit Metab Dis       Date:  2000-06       Impact factor: 4.982

2.  High incidence of propionic acidemia in greenland is due to a prevalent mutation, 1540insCCC, in the gene for the beta-subunit of propionyl CoA carboxylase.

Authors:  K Ravn; M Chloupkova; E Christensen; N J Brandt; H Simonsen; J P Kraus; I M Nielsen; F Skovby; M Schwartz
Journal:  Am J Hum Genet       Date:  2000-05-16       Impact factor: 11.025

3.  New splicing mutations in propionic acidemia.

Authors:  Lourdes R Desviat; Sonia Clavero; Celia Perez-Cerdá; Rosa Navarrete; Magdalena Ugarte; Belen Perez
Journal:  J Hum Genet       Date:  2006-10-19       Impact factor: 3.172

4.  The molecular landscape of propionic acidemia and methylmalonic aciduria in Latin America.

Authors:  Belén Pérez; Celia Angaroni; Rocio Sánchez-Alcudia; Begoña Merinero; Celia Pérez-Cerdá; N Specola; P Rodríguez-Pombo; Moacir Wajner; Raquel Dodelson de Kremer; Verónica Cornejo; Lourdes R Desviat; Magdalena Ugarte
Journal:  J Inherit Metab Dis       Date:  2010-06-15       Impact factor: 4.982

Review 5.  Propionyl-CoA carboxylase - A review.

Authors:  Parith Wongkittichote; Nicholas Ah Mew; Kimberly A Chapman
Journal:  Mol Genet Metab       Date:  2017-10-07       Impact factor: 4.797

6.  Unusual presentation of propionic acidaemia as isolated cardiomyopathy.

Authors:  T M Lee; L J Addonizio; B A Barshop; W K Chung
Journal:  J Inherit Metab Dis       Date:  2009-02-24       Impact factor: 4.982

7.  Clinical characteristics and mutation analysis of propionic acidemia in Thailand.

Authors:  Nithiwat Vatanavicharn; Somporn Liammongkolkul; Osamu Sakamoto; Mahattana Kamolsilp; Achara Sathienkijkanchai; Pornswan Wasant
Journal:  World J Pediatr       Date:  2014-01-25       Impact factor: 2.764

Review 8.  Methylmalonic and propionic acidemias: clinical management update.

Authors:  Jamie L Fraser; Charles P Venditti
Journal:  Curr Opin Pediatr       Date:  2016-12       Impact factor: 2.856

9.  Transcarboxylase 12S crystal structure: hexamer assembly and substrate binding to a multienzyme core.

Authors:  Pamela R Hall; Yan-Fei Wang; Rosa E Rivera-Hainaj; Xiaojing Zheng; Marianne Pustai-Carey; Paul R Carey; Vivien C Yee
Journal:  EMBO J       Date:  2003-05-15       Impact factor: 11.598

10.  Qualitative and quantitative analysis of the effect of splicing mutations in propionic acidemia underlying non-severe phenotypes.

Authors:  Sonia Clavero; Belén Pérez; Ana Rincón; Magdalena Ugarte; Lourdes R Desviat
Journal:  Hum Genet       Date:  2004-07-02       Impact factor: 4.132

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