Literature DB >> 17051315

New splicing mutations in propionic acidemia.

Lourdes R Desviat1, Sonia Clavero1, Celia Perez-Cerdá1, Rosa Navarrete1, Magdalena Ugarte2, Belen Perez1.   

Abstract

Propionic acidemia results from mutations in either of the two genes, PCCA or PCCB, that encode the two subunits of the propionyl-CoA carboxylase (PCC) enzyme. In this study, we report the identification and analysis of seven novel splicing mutations involving consensus donor and acceptor splice sites. Most of them were identified in patients with a Central Asian origin, and some present in several alleles, probably reflecting founder effects. The functional consequences of the splicing mutations were analyzed in patients' fibroblasts, as well as transcript quantification using real-time PCR methods. In the PCCA gene, two mutations were demonstrated to affect 5' splice sites (c.231+1G>C and c.1209+3A>G) and two 3' acceptor splice sites (c.1210delG and c.1430G>T), all causing skipping of the exons involved, with no detectable levels of normally spliced transcript. In the PCCB gene, all three mutations involved 5' donor splice sites-two affected exon 1 splicing (c.154_183+17del46 and c.183+2T>C), the latter activating a cryptic splice site in intron 1, and the remaining mutation (c.1498+2T>C) resulted in exon 14 skipping. The results highlight the necessity to perform transcript analysis in addition to genomic DNA sequencing to characterize the effect of splicing mutations and add relevant information on the genetic epidemiology of the disease.

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Year:  2006        PMID: 17051315     DOI: 10.1007/s10038-006-0068-3

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  16 in total

1.  Transfection screening for defects in the PCCA and PCCB genes encoding propionyl-CoA carboxylase subunits.

Authors:  P Rodriguez-Pombo; C Pérez-Cerdá; L R Desviat; B Pérez; M Ugarte; P Rodríguez-Pombo
Journal:  Mol Genet Metab       Date:  2002-03       Impact factor: 4.797

2.  Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) for measurement of cytokine and growth factor mRNA expression with fluorogenic probes or SYBR Green I.

Authors:  J L Yin; N A Shackel; A Zekry; P H McGuinness; C Richards; K V Putten; G W McCaughan; J M Eris; G A Bishop
Journal:  Immunol Cell Biol       Date:  2001-06       Impact factor: 5.126

Review 3.  Listening to silence and understanding nonsense: exonic mutations that affect splicing.

Authors:  Luca Cartegni; Shern L Chew; Adrian R Krainer
Journal:  Nat Rev Genet       Date:  2002-04       Impact factor: 53.242

4.  Genetic heterogeneity in propionic acidemia patients with alpha-subunit defects. Identification of five novel mutations, one of them causing instability of the protein.

Authors:  E Richard; L R Desviat; B Pérez; C Pérez-Cerdá; M Ugarte
Journal:  Biochim Biophys Acta       Date:  1999-03-30

5.  Translocation and gross deletion breakpoints in human inherited disease and cancer II: Potential involvement of repetitive sequence elements in secondary structure formation between DNA ends.

Authors:  Nadia Chuzhanova; Shaun S Abeysinghe; Michael Krawczak; David N Cooper
Journal:  Hum Mutat       Date:  2003-09       Impact factor: 4.878

Review 6.  Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.

Authors:  Lynne E Maquat
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

7.  RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression.

Authors:  M B Shapiro; P Senapathy
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

8.  The optimization of quantitative reverse transcription PCR for verification of cDNA microarray data.

Authors:  Stacey L Hembruff; David J Villeneuve; Amadeo M Parissenti
Journal:  Anal Biochem       Date:  2005-10-15       Impact factor: 3.365

9.  Cellular and viral splicing factors can modify the splicing pattern of CFTR transcripts carrying splicing mutations.

Authors:  M Nissim-Rafinia; O Chiba-Falek; G Sharon; A Boss; B Kerem
Journal:  Hum Mol Genet       Date:  2000-07-22       Impact factor: 6.150

10.  Human propionyl-CoA carboxylase beta subunit gene: exon-intron definition and mutation spectrum in Spanish and Latin American propionic acidemia patients.

Authors:  P Rodríguez-Pombo; J Hoenicka; S Muro; B Pérez; C Pérez-Cerdá; E Richard; L R Desviat; M Ugarte
Journal:  Am J Hum Genet       Date:  1998-08       Impact factor: 11.025

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  12 in total

Review 1.  Antisense mediated splicing modulation for inherited metabolic diseases: challenges for delivery.

Authors:  Belen Pérez; Lluisa Vilageliu; Daniel Grinberg; Lourdes R Desviat
Journal:  Nucleic Acid Ther       Date:  2014-02       Impact factor: 5.486

2.  Functional characterization of novel genotypes and cellular oxidative stress studies in propionic acidemia.

Authors:  Lorena Gallego-Villar; Celia Pérez-Cerdá; Belén Pérez; David Abia; Magdalena Ugarte; Eva Richard; Lourdes R Desviat
Journal:  J Inherit Metab Dis       Date:  2012-10-03       Impact factor: 4.982

3.  Expansion of the Phenotypic Spectrum of Propionic Acidemia with Isolated Elevated Propionylcarnitine.

Authors:  Gerarda Cappuccio; Paldeep S Atwal; Taraka R Donti; Kiki Ugarte; Nadia Merchant; William J Craigen; V Reid Sutton; Sarah H Elsea
Journal:  JIMD Rep       Date:  2016-11-30

4.  Unusual presentation of propionic acidaemia as isolated cardiomyopathy.

Authors:  T M Lee; L J Addonizio; B A Barshop; W K Chung
Journal:  J Inherit Metab Dis       Date:  2009-02-24       Impact factor: 4.982

5.  Clinical characteristics and mutation analysis of propionic acidemia in Thailand.

Authors:  Nithiwat Vatanavicharn; Somporn Liammongkolkul; Osamu Sakamoto; Mahattana Kamolsilp; Achara Sathienkijkanchai; Pornswan Wasant
Journal:  World J Pediatr       Date:  2014-01-25       Impact factor: 2.764

Review 6.  Methylmalonic and propionic acidemias: clinical management update.

Authors:  Jamie L Fraser; Charles P Venditti
Journal:  Curr Opin Pediatr       Date:  2016-12       Impact factor: 2.856

Review 7.  Structure and function of biotin-dependent carboxylases.

Authors:  Liang Tong
Journal:  Cell Mol Life Sci       Date:  2012-08-07       Impact factor: 9.261

8.  [Propionic acidemia and sensorineural hearing loss: is there a connection at the molecular genetics level?].

Authors:  S Brosch; A Rauffeisen; M Baur; L Michels; F K Trefz; M Pfister
Journal:  HNO       Date:  2008-01       Impact factor: 1.284

9.  Short-term rescue of neonatal lethality in a mouse model of propionic acidemia by gene therapy.

Authors:  Sean E Hofherr; Julien S Senac; Christopher Y Chen; Donna J Palmer; Philip Ng; Michael A Barry
Journal:  Hum Gene Ther       Date:  2009-02       Impact factor: 5.695

10.  Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase.

Authors:  Christine S Huang; Kianoush Sadre-Bazzaz; Yang Shen; Binbin Deng; Z Hong Zhou; Liang Tong
Journal:  Nature       Date:  2010-08-19       Impact factor: 49.962

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