Literature DB >> 9678339

The gene-richest bands of human chromosomes replicate at the onset of the S-phase.

C Federico1, S Saccone, G Bernardi.   

Abstract

Previous investigations on the correlations between isochore organization and human chromosomal bands have identified three sets of R(everse) bands: H3+, H3* and H3-, endowed with large, moderate, and no detectable amounts of the gene-richest H3 isochores, respectively. In the present work we compared the replication timing of these three sets of bands and showed that the chromosomal bands containing H3 isochores replicate almost entirely (in the case of H3+ bands) or largely (in the case of H3* bands) at the onset of S phase, whereas chromosomal bands not containing H3 isochores (H3- bands) replicate later. The existence, at a resolution of 400 bands per haploid genome, of at least three distinct subsets of R bands is, therefore, not only supported by their GC and gene concentration but also by their replication times.

Entities:  

Mesh:

Year:  1998        PMID: 9678339     DOI: 10.1159/000014961

Source DB:  PubMed          Journal:  Cytogenet Cell Genet        ISSN: 0301-0171


  13 in total

1.  Identification of the gene-richest bands in human prometaphase chromosomes.

Authors:  S Saccone; C Federico; I Solovei; M F Croquette; G Della Valle; G Bernardi
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  Gene density in the Giemsa bands of human chromosomes.

Authors:  C Federico; L Andreozzi; S Saccone; G Bernardi
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

3.  Compositional mapping of chicken chromosomes and identification of the gene-richest regions.

Authors:  L Andreozzi; C Federico; S Motta; S Saccone; A L Sazanova; A A Sazanov; A F Smirnov; S A Galkina; N A Lukina; A V Rodionov; N Carels; G Bernardi
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

4.  Genes, isochores and bands in human chromosomes 21 and 22.

Authors:  S Saccone; A Pavlicek; C Federico; J Paces; G Bernard
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

5.  DNA helix: the importance of being GC-rich.

Authors:  Alexander E Vinogradov
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

6.  DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.

Authors:  Eric J White; Olof Emanuelsson; David Scalzo; Thomas Royce; Steven Kosak; Edward J Oakeley; Sherman Weissman; Mark Gerstein; Mark Groudine; Michael Snyder; Dirk Schübeler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-10       Impact factor: 11.205

7.  Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates.

Authors:  Concetta Federico; Cinzia Scavo; Catia Daniela Cantarella; Salvatore Motta; Salvatore Saccone; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-01-11       Impact factor: 4.316

8.  Replication timing, chromosomal bands, and isochores.

Authors:  Maria Costantini; Giorgio Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-27       Impact factor: 11.205

9.  The radial arrangement of the human chromosome 7 in the lymphocyte cell nucleus is associated with chromosomal band gene density.

Authors:  Concetta Federico; Catia Daniela Cantarella; Patrizia Di Mare; Sabrina Tosi; Salvatore Saccone
Journal:  Chromosoma       Date:  2008-04-17       Impact factor: 4.316

10.  Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5.

Authors:  M D Wilson; C Riemer; D W Martindale; P Schnupf; A P Boright; T L Cheung; D M Hardy; S Schwartz; S W Scherer; L C Tsui; W Miller; B F Koop
Journal:  Nucleic Acids Res       Date:  2001-03-15       Impact factor: 16.971

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