Literature DB >> 11721951

Compositional mapping of chicken chromosomes and identification of the gene-richest regions.

L Andreozzi1, C Federico, S Motta, S Saccone, A L Sazanova, A A Sazanov, A F Smirnov, S A Galkina, N A Lukina, A V Rodionov, N Carels, G Bernardi.   

Abstract

'Compositional chromosomal mapping', namely the assessment of the GC level of chromosomal bands, led to the identification, in the human chromosomes, of the GC-richest H3+ bands and of the GC-poorest L1+ bands, which were so called on the basis of the isochore family predominantly present in the bands. The isochore organization of the avian genome is very similar to those of most mammals, the only difference being the presence of an additional, GC-richest, H4 isochore family. In contrast, the avian karyotypes are very different from those of mammals, being characterized, in most species, by few macrochromosomes and by a large number of microchromosomes. The 'compositional mapping' of chicken mitotic and meiotic chromosomes by in-situ hybridization of isochore families showed that the chicken GC-richest isochores are localized not only on a large number of microchromosomes but also on almost all telomeric bands of macrochromosomes. On the other hand, the GC-poorest isochores are generally localized on the internal regions of macrochromosomes and are almost absent in microchromosomes. Thus, the distinct localization of the GC-richest and the GC-poorest bands observed on human chromosomes appears to be a general feature of chromosomes from warm-blooded vertebrates.

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Year:  2001        PMID: 11721951     DOI: 10.1023/a:1012436900788

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  38 in total

1.  Identification of the gene-richest bands in human prometaphase chromosomes.

Authors:  S Saccone; C Federico; I Solovei; M F Croquette; G Della Valle; G Bernardi
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

Review 2.  Isochores and the evolutionary genomics of vertebrates.

Authors:  G Bernardi
Journal:  Gene       Date:  2000-01-04       Impact factor: 3.688

3.  Differences in gene density on chicken macrochromosomes and microchromosomes.

Authors:  J Smith; C K Bruley; I R Paton; I Dunn; C T Jones; D Windsor; D R Morrice; A S Law; J Masabanda; A Sazanov; D Waddington; R Fries; D W Burt
Journal:  Anim Genet       Date:  2000-04       Impact factor: 3.169

Review 4.  The human genome: organization and evolutionary history.

Authors:  G Bernardi
Journal:  Annu Rev Genet       Date:  1995       Impact factor: 16.830

5.  Compositional mapping of mouse chromosomes and identification of the gene-rich regions.

Authors:  S Saccone; S Caccio; P Perani; L Andreozzi; A Rapisarda; S Motta; G Bernardi
Journal:  Chromosome Res       Date:  1997-08       Impact factor: 5.239

6.  [New system of chromosome banding: the T bands (author's transl)].

Authors:  B Dutrillaux
Journal:  Chromosoma       Date:  1973-04-27       Impact factor: 4.316

7.  The isochore patterns of mammalian genomes and their phylogenetic implications.

Authors:  G Sabeur; G Macaya; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1993-08       Impact factor: 2.395

8.  An analysis of eukaryotic genomes by density gradient centrifugation.

Authors:  J P Thiery; G Macaya; G Bernardi
Journal:  J Mol Biol       Date:  1976-11       Impact factor: 5.469

9.  Comparative painting reveals strong chromosome homology over 80 million years of bird evolution.

Authors:  S Shetty; D K Griffin; J A Graves
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

10.  An extended chicken karyotype, including the NOR chromosome.

Authors:  H Auer; B Mayr; M Lambrou; W Schleger
Journal:  Cytogenet Cell Genet       Date:  1987
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  13 in total

1.  Avian genomes: different karyotypes but a similar distribution of the GC-richest chromosome regions at interphase.

Authors:  Concetta Federico; Catia Daniela Cantarella; Cinzia Scavo; Salvatore Saccone; Bertrand Bed'Hom; Giorgio Bernardi
Journal:  Chromosome Res       Date:  2005-12-08       Impact factor: 5.239

2.  Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates.

Authors:  Concetta Federico; Cinzia Scavo; Catia Daniela Cantarella; Salvatore Motta; Salvatore Saccone; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-01-11       Impact factor: 4.316

3.  The radial arrangement of the human chromosome 7 in the lymphocyte cell nucleus is associated with chromosomal band gene density.

Authors:  Concetta Federico; Catia Daniela Cantarella; Patrizia Di Mare; Sabrina Tosi; Salvatore Saccone
Journal:  Chromosoma       Date:  2008-04-17       Impact factor: 4.316

4.  Nuclei of chicken neurons in tissues and three-dimensional cell cultures are organized into distinct radial zones.

Authors:  Doris Berchtold; Stephanie Fesser; Gesine Bachmann; Alexander Kaiser; John-Christian Eilert; Florian Frohns; Nicolas Sadoni; Joscha Muck; Elisabeth Kremmer; Dirk Eick; Paul G Layer; Daniele Zink
Journal:  Chromosome Res       Date:  2011-01-20       Impact factor: 5.239

Review 5.  The Isochores as a Fundamental Level of Genome Structure and Organization: A General Overview.

Authors:  Maria Costantini; Héctor Musto
Journal:  J Mol Evol       Date:  2017-02-27       Impact factor: 2.395

Review 6.  But where did the centromeres go in the chicken genome models?

Authors:  Benoît Piégu; Peter Arensburger; Florian Guillou; Yves Bigot
Journal:  Chromosome Res       Date:  2018-09-17       Impact factor: 5.239

7.  cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

Authors:  Shigehiro Kuraku; Junko Ishijima; Chizuko Nishida-Umehara; Kiyokazu Agata; Shigeru Kuratani; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2006-03-17       Impact factor: 5.239

8.  Molecular structures of centromeric heterochromatin and karyotypic evolution in the Siamese crocodile (Crocodylus siamensis) (Crocodylidae, Crocodylia).

Authors:  Taiki Kawagoshi; Chizuko Nishida; Hidetoshi Ota; Yoshinori Kumazawa; Hideki Endo; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2008-10-22       Impact factor: 5.239

9.  Vanishing GC-rich isochores in mammalian genomes.

Authors:  Laurent Duret; Marie Semon; Gwenaël Piganeau; Dominique Mouchiroud; Nicolas Galtier
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

10.  Evidence of the adaptive evolution of immune genes in chicken.

Authors:  Tim Downing; Paul Cormican; Cliona O'Farrelly; Daniel G Bradley; Andrew T Lloyd
Journal:  BMC Res Notes       Date:  2009-12-15
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