Literature DB >> 11721952

Genes, isochores and bands in human chromosomes 21 and 22.

S Saccone1, A Pavlicek, C Federico, J Paces, G Bernard.   

Abstract

The recently available DNA sequences from chromosomes 21 and 22 enabled us to define the relationships of different band types with isochores and with gene concentration and to compare these relationships with previous results. We showed that chromosomal bands appear as Giemsa or Reverse bands depending not on their absolute GC level, but on the composition GC level relative to those of adjacent contiguous bands. We also demonstrated that the GC-richest, and gene-richest H3+ bands are characterized by a lower DNA compaction compared with the GC-poorest, gene-poorest L1+ bands. Moreover, our results indicate that the human genome contains about 30,000 genes.

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Year:  2001        PMID: 11721952     DOI: 10.1023/a:1012443217627

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  28 in total

1.  Identification of the gene-richest bands in human prometaphase chromosomes.

Authors:  S Saccone; C Federico; I Solovei; M F Croquette; G Della Valle; G Bernardi
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

Review 2.  Isochores and the evolutionary genomics of vertebrates.

Authors:  G Bernardi
Journal:  Gene       Date:  2000-01-04       Impact factor: 3.688

3.  A systematic, high-resolution linkage of the cytogenetic and physical maps of the human genome.

Authors:  I R Kirsch; E D Green; R Yonescu; R Strausberg; N Carter; D Bentley; M A Leversha; I Dunham; V V Braden; E Hilgenfeld; G Schuler; A E Lash; G L Shen; M Martelli; W M Kuehl; R D Klausner; T Ried
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

4.  Analysis of expressed sequence tags indicates 35,000 human genes.

Authors:  B Ewing; P Green
Journal:  Nat Genet       Date:  2000-06       Impact factor: 38.330

5.  Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence.

Authors:  H Roest Crollius; O Jaillon; A Bernot; C Dasilva; L Bouneau; C Fischer; C Fizames; P Wincker; P Brottier; F Quétier; W Saurin; J Weissenbach
Journal:  Nat Genet       Date:  2000-06       Impact factor: 38.330

6.  The distribution of genes in the human genome.

Authors:  D Mouchiroud; G D'Onofrio; B Aïssani; G Macaya; C Gautier; G Bernardi
Journal:  Gene       Date:  1991-04       Impact factor: 3.688

Review 7.  The isochore organization of the human genome.

Authors:  G Bernardi
Journal:  Annu Rev Genet       Date:  1989       Impact factor: 16.830

8.  [New system of chromosome banding: the T bands (author's transl)].

Authors:  B Dutrillaux
Journal:  Chromosoma       Date:  1973-04-27       Impact factor: 4.316

9.  An approach to the organization of eukaryotic genomes at a macromolecular level.

Authors:  G Macaya; J P Thiery; G Bernardi
Journal:  J Mol Biol       Date:  1976-11       Impact factor: 5.469

10.  The gene guessing game.

Authors:  I Dunham
Journal:  Yeast       Date:  2000-09-30       Impact factor: 3.239

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  9 in total

1.  Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates.

Authors:  Concetta Federico; Cinzia Scavo; Catia Daniela Cantarella; Salvatore Motta; Salvatore Saccone; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-01-11       Impact factor: 4.316

2.  A new platform linking chromosomal and sequence information.

Authors:  Agata Kowalska; Eva Bozsaky; Thomas Ramsauer; Dietmar Rieder; Gabriela Bindea; Thomas Lörch; Zlatko Trajanoski; Peter F Ambros
Journal:  Chromosome Res       Date:  2007-05-10       Impact factor: 5.239

3.  Replication timing, chromosomal bands, and isochores.

Authors:  Maria Costantini; Giorgio Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-27       Impact factor: 11.205

4.  The radial arrangement of the human chromosome 7 in the lymphocyte cell nucleus is associated with chromosomal band gene density.

Authors:  Concetta Federico; Catia Daniela Cantarella; Patrizia Di Mare; Sabrina Tosi; Salvatore Saccone
Journal:  Chromosoma       Date:  2008-04-17       Impact factor: 4.316

5.  Human chromosomal bands: nested structure, high-definition map and molecular basis.

Authors:  Maria Costantini; Oliver Clay; Concetta Federico; Salvatore Saccone; Fabio Auletta; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-10-28       Impact factor: 4.316

6.  Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

Authors:  Nicola L Mahy; Paul E Perry; Wendy A Bickmore
Journal:  J Cell Biol       Date:  2002-12-09       Impact factor: 10.539

7.  The formation of chromatin domains involves a primary step based on the 3-D structure of DNA.

Authors:  Giorgio Bernardi
Journal:  Sci Rep       Date:  2018-12-13       Impact factor: 4.379

8.  Chromosome Architecture and Genome Organization.

Authors:  Giorgio Bernardi
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

9.  Segmenting the Human Genome into Isochores.

Authors:  Paolo Cozzi; Luciano Milanesi; Giorgio Bernardi
Journal:  Evol Bioinform Online       Date:  2015-11-25       Impact factor: 1.625

  9 in total

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