Literature DB >> 9675175

Phospholipid component volumes: determination and application to bilayer structure calculations.

R S Armen1, O D Uitto, S E Feller.   

Abstract

We present a new method for the determination of bilayer structure based on a combination of computational studies and laboratory experiments. From molecular dynamics simulations, the volumes of submolecular fragments of saturated and unsaturated phosphatidylcholines in the liquid crystalline state have been extracted with a precision not available experimentally. Constancy of component volumes, both among different lipids and as a function of membrane position for a given lipid, have been examined. The component volumes were then incorporated into the liquid crystallographic method described by Wiener and White (1992. Biophys. J. 61:434-447, and references therein) for determining the structure of a fluid-phase dioleoylphosphatidylcholine bilayer from x-ray and neutron diffraction experiments.

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Year:  1998        PMID: 9675175      PMCID: PMC1299748          DOI: 10.1016/S0006-3495(98)77563-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1991-01       Impact factor: 4.033

2.  Specific volumes of lipids in fully hydrated bilayer dispersions.

Authors:  M C Wiener; S Tristram-Nagle; D A Wilkinson; L E Campbell; J F Nagle
Journal:  Biochim Biophys Acta       Date:  1988-02-18

3.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

4.  X-ray structure determination of fully hydrated L alpha phase dipalmitoylphosphatidylcholine bilayers.

Authors:  J F Nagle; R Zhang; S Tristram-Nagle; W Sun; H I Petrache; R M Suter
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

5.  The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance.

Authors:  A Seelig; J Seelig
Journal:  Biochemistry       Date:  1974-11-05       Impact factor: 3.162

6.  Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies.

Authors:  S E Feller; D Yin; R W Pastor; A D MacKerell
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

7.  Area/lipid of bilayers from NMR.

Authors:  J F Nagle
Journal:  Biophys J       Date:  1993-05       Impact factor: 4.033

8.  Determination of component volumes of lipid bilayers from simulations.

Authors:  H I Petrache; S E Feller; J F Nagle
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

9.  Area per molecule and distribution of water in fully hydrated dilauroylphosphatidylethanolamine bilayers.

Authors:  T J McIntosh; S A Simon
Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

10.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. I. Scaling of neutron data and the distributions of double bonds and water.

Authors:  M C Wiener; G I King; S H White
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

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  73 in total

1.  Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration.

Authors:  R J Mashl; H L Scott; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Diffuse scattering provides material parameters and electron density profiles of biomembranes.

Authors:  Yufeng Liu; John F Nagle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-04-30

3.  The influenza fusion peptide adopts a flexible flat V conformation in membranes.

Authors:  Sébastien Légaré; Patrick Lagüe
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

4.  The effect of neutral helper lipids on the structure of cationic lipid monolayers.

Authors:  A P Dabkowska; D J Barlow; A V Hughes; R A Campbell; P J Quinn; M J Lawrence
Journal:  J R Soc Interface       Date:  2011-08-10       Impact factor: 4.118

5.  Effect of the cosolutes trehalose and methanol on the equilibrium and phase-transition properties of glycerol-monopalmitate lipid bilayers investigated using molecular dynamics simulations.

Authors:  Monika Laner; Bruno A C Horta; Philippe H Hünenberger
Journal:  Eur Biophys J       Date:  2014-08-24       Impact factor: 1.733

6.  Defining the structural characteristics of annexin V binding to a mimetic apoptotic membrane.

Authors:  Jingxiong Lu; Anton P Le Brun; Seong Hoong Chow; Takuya Shiota; Bo Wang; Tsung-Wu Lin; Guei-Sheung Liu; Hsin-Hui Shen
Journal:  Eur Biophys J       Date:  2015-08-14       Impact factor: 1.733

7.  Lipid bilayer molecular dynamics study of lipid-derived agonists of the putative cannabinoid receptor, GPR55.

Authors:  Evangelia Kotsikorou; Diane L Lynch; Mary E Abood; Patricia H Reggio
Journal:  Chem Phys Lipids       Date:  2010-12-24       Impact factor: 3.329

8.  Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions.

Authors:  Wei Zhao; Tomasz Róg; Andrey A Gurtovenko; Ilpo Vattulainen; Mikko Karttunen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

9.  Molecular dynamics simulation of transmembrane polypeptide orientational fluctuations.

Authors:  David J Goodyear; Simon Sharpe; Chris W M Grant; Michael R Morrow
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

10.  Interaction between lipid monolayers and poloxamer 188: an X-ray reflectivity and diffraction study.

Authors:  Guohui Wu; Jaroslaw Majewski; Canay Ege; Kristian Kjaer; Markus Jan Weygand; Ka Yee C Lee
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

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