Literature DB >> 2015382

Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method.

M C Wiener1, S H White.   

Abstract

This is the second of two papers describing a method for the joint refinement of the structure of fluid bilayers using x-ray and neutron diffraction data. We showed in the first paper (Wiener, M. C., and S. H. White. 1990. Biophys. J. 59:162-173) that fluid bilayers generally consist of a nearly perfect lattice of thermally disordered unit cells and that the canonical resolution d/hmax is a measure of the widths of quasimolecular components represented by simple Gaussian functions. The thermal disorder makes possible a "composition space" representation in which the quasimolecular Gaussian distributions describe the number or probability of occupancy per unit length across the width of the bilayer of each component. This representation permits the joint refinement of neutron and x-ray lamellar diffraction data by means of a single quasimolecular structure that is fit simultaneously to both diffraction data sets. Scaling of each component by the appropriate neutron or x-ray scattering length maps the composition space profile to the appropriate scattering length space for comparison to experimental data. Other extensive properties, such as mass, can also be obtained by an appropriate scaling of the refined composition space structure. Based upon simple bilayer models involving crystal and liquid crystal structural information, we estimate that a fluid bilayer with hmax observed diffraction orders will be accurately represented by a structure with approximately hmax quasimolecular components. Strategies for assignment of quasimolecular components are demonstrated through detailed parsing of a phospholipid molecule based upon the one-dimensional projection of the crystal structure of dimyristoylphosphatidylcholine. Finally, we discuss in detail the number of experimental variables required for the composition space joint refinement. We find fluid bilayer structures to be marginally determined by the experimental data. The analysis of errors, which takes on particular importance under these circumstances, is also discussed.

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Year:  1991        PMID: 2015382      PMCID: PMC1281129          DOI: 10.1016/S0006-3495(91)82209-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

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Authors:  J C Norvell; A C Nunes; B P Schoenborn
Journal:  Science       Date:  1975-11-07       Impact factor: 47.728

2.  The Direct Methods of X-ray Crystallography.

Authors:  H Hauptman
Journal:  Science       Date:  1986-07-11       Impact factor: 47.728

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Authors:  N P Franks
Journal:  J Mol Biol       Date:  1976-01-25       Impact factor: 5.469

4.  Neutron diffraction studies on selectively deuterated phospholipid bilayers.

Authors:  G Büldt; H U Gally; A Seelig; J Seelig; G Zaccai
Journal:  Nature       Date:  1978-01-12       Impact factor: 49.962

5.  Neutron diffraction studies on phosphatidylcholine model membranes. II. Chain conformation and segmental disorder.

Authors:  G Zaccai; G Büldt; A Seelig; J Seelig
Journal:  J Mol Biol       Date:  1979-11-15       Impact factor: 5.469

6.  Evaluation and propagation of confidence intervals in nonlinear, asymmetrical variance spaces. Analysis of ligand-binding data.

Authors:  M L Johnson
Journal:  Biophys J       Date:  1983-10       Impact factor: 4.033

7.  A statistical mechanical model of the lipid bilayer above its phase transition.

Authors:  D W Gruen
Journal:  Biochim Biophys Acta       Date:  1980-01-25

8.  A direct method for determination of membrane electron density profiles on an absolute scale.

Authors:  N P Franks; T Arunachalam; E Caspi
Journal:  Nature       Date:  1978-11-30       Impact factor: 49.962

9.  X-ray diffraction study in water of lipids extracted from human erythrocytes: the position of cholesterol in the lipid lamellae.

Authors:  R P Rand; V Luzzati
Journal:  Biophys J       Date:  1968-01       Impact factor: 4.033

10.  Electron diffraction structure analysis of phospholipids.

Authors:  D L Dorset
Journal:  J Electron Microsc Tech       Date:  1987-09
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  49 in total

1.  Structure, location, and lipid perturbations of melittin at the membrane interface.

Authors:  K Hristova; C E Dempsey; S H White
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Continuous distribution model for the investigation of complex molecular architectures near interfaces with scattering techniques.

Authors:  Prabhanshu Shekhar; Hirsh Nanda; Mathias Lösche; Frank Heinrich
Journal:  J Appl Phys       Date:  2011-11-30       Impact factor: 2.546

3.  Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. I. Fluid bilayer models and the limits of resolution.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1991-01       Impact factor: 4.033

4.  Experimental validation of molecular dynamics simulations of lipid bilayers: a new approach.

Authors:  Ryan W Benz; Francisco Castro-Román; Douglas J Tobias; Stephen H White
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

5.  Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques.

Authors:  Martin B Ulmschneider; Mark S P Sansom; Alfredo Di Nola
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

6.  A generalized born implicit-membrane representation compared to experimental insertion free energies.

Authors:  Martin B Ulmschneider; Jakob P Ulmschneider; Mark S P Sansom; Alfredo Di Nola
Journal:  Biophys J       Date:  2007-01-11       Impact factor: 4.033

7.  Influence of surface chemistry on the structural organization of monomolecular protein layers adsorbed to functionalized aqueous interfaces.

Authors:  M Lösche; M Piepenstock; A Diederich; T Grünewald; K Kjaer; D Vaknin
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

8.  Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data.

Authors:  Milka Doktorova; Norbert Kučerka; Jacob J Kinnun; Jianjun Pan; Drew Marquardt; Haden L Scott; Richard M Venable; Richard W Pastor; Stephen R Wassall; John Katsaras; Frederick A Heberle
Journal:  J Phys Chem B       Date:  2020-06-16       Impact factor: 2.991

9.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

10.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

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