Literature DB >> 9653158

Single amino acid substitution in prokaryote polypeptide release factor 2 permits it to terminate translation at all three stop codons.

K Ito1, M Uno, Y Nakamura.   

Abstract

Prokaryotic translational release factors, RF1 and RF2, catalyze polypeptide release at UAG/UAA and UGA/UAA stop codons, respectively. In this study, we isolated a bacterial RF2 mutant (RF2*) containing an E167K substitution that restored the growth of a temperature-sensitive RF1 strain of Escherichia coli and the viability of a chromosomal RF1/RF2 double knockout. In both in vivo and in vitro polypeptide termination assays, RF2* catalyzed UAG/UAA termination, as does RF1, as well as UGA termination, showing that RF2* acquired omnipotent release activity. This result suggests that the E167K mutation abolished the putative third-base discriminator function of RF2. These findings are interpreted as indicating that prokaryotic and eukaryotic release factors share the same anticodon moiety and that only one omnipotent release factor is sufficient for bacterial growth, similar to the eukaryotic single omnipotent factor.

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Year:  1998        PMID: 9653158      PMCID: PMC20947          DOI: 10.1073/pnas.95.14.8165

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Autogenous suppression of an opal mutation in the gene encoding peptide chain release factor 2.

Authors:  K Kawakami; Y Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

Review 2.  Translational termination: "stop" for protein synthesis or "pause" for regulation of gene expression.

Authors:  W P Tate; C M Brown
Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

3.  UGA codon context which spans three codons. Reversal by ms2i6A37 in tRNA, mutation in rpsD(S4) or streptomycin.

Authors:  A Björnsson; L A Isaksson
Journal:  J Mol Biol       Date:  1993-08-20       Impact factor: 5.469

4.  Conditionally lethal and recessive UGA-suppressor mutations in the prfB gene encoding peptide chain release factor 2 of Escherichia coli.

Authors:  K Kawakami; T Inada; Y Nakamura
Journal:  J Bacteriol       Date:  1988-11       Impact factor: 3.490

Review 5.  Polypeptide chain termination in Saccharomyces cerevisiae.

Authors:  I Stansfield; M F Tuite
Journal:  Curr Genet       Date:  1994-05       Impact factor: 3.886

6.  A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor.

Authors:  L Frolova; X Le Goff; H H Rasmussen; S Cheperegin; G Drugeon; M Kress; I Arman; A L Haenni; J E Celis; M Philippe
Journal:  Nature       Date:  1994-12-15       Impact factor: 49.962

7.  Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli.

Authors:  O Mikuni; K Ito; J Moffat; K Matsumura; K McCaughan; T Nobukuni; W Tate; Y Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

8.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

9.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  The second to last amino acid in the nascent peptide as a codon context determinant.

Authors:  S Mottagui-Tabar; A Björnsson; L A Isaksson
Journal:  EMBO J       Date:  1994-01-01       Impact factor: 11.598

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  35 in total

1.  Translation termination in eukaryotes: polypeptide release factor eRF1 is composed of functionally and structurally distinct domains.

Authors:  L Y Frolova; T I Merkulova; L L Kisselev
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

2.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

Review 3.  Evolutionary conservation of reactions in translation.

Authors:  M Clelia Ganoza; Michael C Kiel; Hiroyuki Aoki
Journal:  Microbiol Mol Biol Rev       Date:  2002-09       Impact factor: 11.056

Review 4.  Determination of the core of a minimal bacterial gene set.

Authors:  Rosario Gil; Francisco J Silva; Juli Peretó; Andrés Moya
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

5.  The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop.

Authors:  David J Young; Christina D Edgar; Elizabeth S Poole; Warren P Tate
Journal:  RNA       Date:  2010-06-28       Impact factor: 4.942

6.  Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate.

Authors:  Yusuke Terui; Kyohei Higashi; Shiho Taniguchi; Ai Shigemasa; Kazuhiro Nishimura; Kaneyoshi Yamamoto; Keiko Kashiwagi; Akira Ishihama; Kazuei Igarashi
Journal:  J Bacteriol       Date:  2007-01-12       Impact factor: 3.490

Review 7.  What recent ribosome structures have revealed about the mechanism of translation.

Authors:  T Martin Schmeing; V Ramakrishnan
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

Review 8.  Structural aspects of translation termination on the ribosome.

Authors:  Andrei A Korostelev
Journal:  RNA       Date:  2011-06-23       Impact factor: 4.942

9.  Decoding on the ribosome depends on the structure of the mRNA phosphodiester backbone.

Authors:  Hannah E Keedy; Erica N Thomas; Hani S Zaher
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

10.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

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