Literature DB >> 9653132

Characterizing semilocal motions in proteins by NMR relaxation studies.

M W Fischer1, L Zeng, A Majumdar, E R Zuiderweg.   

Abstract

The understanding of protein function is incomplete without the study of protein dynamics. NMR spectroscopy is valuable for probing nanosecond and picosecond dynamics via relaxation studies. The use of 15N relaxation to study backbone dynamics has become virtually standard. Here, we propose to measure the relaxation of additional nuclei on each peptide plane allowing for the observation of anisotropic local motions. This allows the nature of local motions to be characterized in proteins. As an example, semilocal rotational motion was detected for part of a helix of the protein Escherichia coli flavodoxin.

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Year:  1998        PMID: 9653132      PMCID: PMC20921          DOI: 10.1073/pnas.95.14.8016

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

Review 1.  Molecular dynamics simulations in biology.

Authors:  M Karplus; G A Petsko
Journal:  Nature       Date:  1990-10-18       Impact factor: 49.962

2.  NMR Relaxation Mechanisms for Backbone Carbonyl Carbons in a 13 C, 15 N-Labeled Protein

Authors: 
Journal:  J Magn Reson       Date:  1997-05       Impact factor: 2.229

3.  Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.

Authors:  M V Milburn; L Tong; A M deVos; A Brünger; Z Yamaizumi; S Nishimura; S H Kim
Journal:  Science       Date:  1990-02-23       Impact factor: 47.728

4.  Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding.

Authors:  D Yang; L E Kay
Journal:  J Mol Biol       Date:  1996-10-25       Impact factor: 5.469

5.  NMR evidence for slow collective motions in cyanometmyoglobin.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Nat Struct Biol       Date:  1997-04

6.  Study of protein dynamics in solution by measurement of (13)C (α)- (13)CO NOE and (13)CO longitudinal relaxation.

Authors:  L Zeng; M W Fischer; E R Zuiderweg
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

7.  Measurement of (13)C (α)- (13)CO cross-relaxation rates in (15)N-/ (13)C-labelled proteins.

Authors:  F Cordier; B Brutscher; D Marion
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

8.  Essential dynamics of proteins.

Authors:  A Amadei; A B Linssen; H J Berendsen
Journal:  Proteins       Date:  1993-12

9.  A flavodoxin that is required for enzyme activation: the structure of oxidized flavodoxin from Escherichia coli at 1.8 A resolution.

Authors:  D M Hoover; M L Ludwig
Journal:  Protein Sci       Date:  1997-12       Impact factor: 6.725

Review 10.  Dynamic properties of proteins from NMR spectroscopy.

Authors:  A G Palmer
Journal:  Curr Opin Biotechnol       Date:  1993-08       Impact factor: 9.740

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  13 in total

1.  Quantifying Lipari-Szabo modelfree parameters from 13CO NMR relaxation experiments.

Authors:  Tianzhi Wang; Daniel S Weaver; Sheng Cai; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2006-09-22       Impact factor: 2.835

2.  Vibrational averaging of chemical shift anisotropies in model peptides.

Authors:  Sishi Tang; David A Case
Journal:  J Biomol NMR       Date:  2007-06-12       Impact factor: 2.835

3.  Global and local mobility of apocalmodulin monitored through fast-field cycling relaxometry.

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Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

4.  Determination of the residue-specific 15N CSA tensor principal components using multiple alignment media.

Authors:  Robert A Burton; Nico Tjandra
Journal:  J Biomol NMR       Date:  2006-07-06       Impact factor: 2.835

5.  Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains.

Authors:  Soumyasri Dasgupta; Xiaoyu Hu; Peter H J Keizers; Wei-Min Liu; Claudio Luchinat; Malini Nagulapalli; Mark Overhand; Giacomo Parigi; Luca Sgheri; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2011-08-09       Impact factor: 2.835

6.  Solution structure of inhibitor-free human metalloelastase (MMP-12) indicates an internal conformational adjustment.

Authors:  Rajagopalan Bhaskaran; Mark O Palmier; Nusayba A Bagegni; Xiangyang Liang; Steven R Van Doren
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

7.  Deuterium spin probes of backbone order in proteins: 2H NMR relaxation study of deuterated carbon alpha sites.

Authors:  Devon Sheppard; Da-Wei Li; Rafael Brüschweiler; Vitali Tugarinov
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

8.  Water spin dynamics during apoptotic cell death in glioma gene therapy probed by T1rho and T2rho.

Authors:  A Sierra; S Michaeli; J-P Niskanen; P K Valonen; H I Gröhn; S Ylä-Herttuala; M Garwood; O H Gröhn
Journal:  Magn Reson Med       Date:  2008-06       Impact factor: 4.668

9.  Vitamin B(12) and alpha-Ribonucleosides.

Authors:  Tilak Chandra; Kenneth L Brown
Journal:  Tetrahedron       Date:  2008-01-01       Impact factor: 2.457

10.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

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