Literature DB >> 19751682

Global and local mobility of apocalmodulin monitored through fast-field cycling relaxometry.

Valentina Borsi1, Claudio Luchinat, Giacomo Parigi.   

Abstract

Calmodulin (CaM) is a ubiquitous eukaryotic protein with two conformationally independent domains that can bind up to two calcium ions each. In the calcium-bound state, CaM is able to regulate a vast number of cellular activities by binding to a multiplicity of target proteins in different modes. Its versatility has been ascribed to its anomalously high flexibility. The calcium-free form (apoCaM), which is the resting state of CaM in cells, is also able to functionally bind a number of protein targets, but its dynamics has received less attention. At variance with the calcium-bound form, the crystal structure of apoCaM shows a compact organization of the two domains, but NMR measurements could not detect any contact between them, thus indicating the presence of mobility in solution. The mobility of apoCaM is here investigated through protein proton relaxation rate measurements performed with a high-sensitivity fast-field cycling relaxometer. Such measurements provide direct access to the spectral density function and show that 1), the reorientation time is in agreement with a closed form of the protein; but 2), the collective order parameter is much smaller than for other well folded compact proteins, indicating that a remarkably large side-chain mobility must be present.

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Year:  2009        PMID: 19751682      PMCID: PMC2749786          DOI: 10.1016/j.bpj.2009.07.005

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  58 in total

1.  Structure of the gating domain of a Ca2+-activated K+ channel complexed with Ca2+/calmodulin.

Authors:  M A Schumacher; A F Rivard; H P Bächinger; J P Adelman
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

2.  HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations.

Authors:  J García de la Torre; M L Huertas; B Carrasco
Journal:  J Magn Reson       Date:  2000-11       Impact factor: 2.229

3.  Analysis of slow interdomain motion of macromolecules using NMR relaxation data.

Authors:  J L Baber; A Szabo; N Tjandra
Journal:  J Am Chem Soc       Date:  2001-05-02       Impact factor: 15.419

4.  Functional dynamics in the active site of the ribonuclease binase.

Authors:  L Wang; Y Pang; T Holder; J R Brender; A V Kurochkin; E R Zuiderweg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

Review 5.  Protein dynamics from NMR.

Authors:  R Ishima; D A Torchia
Journal:  Nat Struct Biol       Date:  2000-09

6.  Structural dynamics in the C-terminal domain of calmodulin at low calcium levels.

Authors:  A Malmendal; J Evenäs; S Forsén; M Akke
Journal:  J Mol Biol       Date:  1999-11-05       Impact factor: 5.469

Review 7.  Calmodulin: a prototypical calcium sensor.

Authors:  D Chin; A R Means
Journal:  Trends Cell Biol       Date:  2000-08       Impact factor: 20.808

8.  A model of interdomain mobility in a multidomain protein.

Authors:  Yaroslav E Ryabov; David Fushman
Journal:  J Am Chem Soc       Date:  2007-02-24       Impact factor: 15.419

9.  Dynamics of the transition between open and closed conformations in a calmodulin C-terminal domain mutant.

Authors:  J Evenäs; A Malmendal; M Akke
Journal:  Structure       Date:  2001-03-07       Impact factor: 5.006

10.  Calcium-dependent stabilization of the central sequence between Met(76) and Ser(81) in vertebrate calmodulin.

Authors:  Z Qin; T C Squier
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

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  2 in total

1.  NMR studies on domain diffusion and alignment in modular GB1 repeats.

Authors:  Joseph D Walsh; Katlyn Meier; Rieko Ishima; Angela M Gronenborn
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Modulation of calmodulin lobes by different targets: an allosteric model with hemiconcerted conformational transitions.

Authors:  Massimo Lai; Denis Brun; Stuart J Edelstein; Nicolas Le Novère
Journal:  PLoS Comput Biol       Date:  2015-01-22       Impact factor: 4.475

  2 in total

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