Literature DB >> 9651497

An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature.

J L Bard1, M H Kaufman, C Dubreuil, R M Brune, A Burger, R A Baldock, D R Davidson.   

Abstract

This paper reports an internet-accessible database of mouse developmental anatomy (DMDA) that currently holds a hierarchy of the names and synonyms of the tissues in the first 22 Theiler stages of development (E1-E13.5), together with other appropriate information. The purposes of the database are to provide, first, a nomenclature for analyzing normal and mutant mouse anatomy, and second a language for inputting, storing and querying gene-expression and other spatially organized data. DMDA currently contains some 6900 named and staged tissues (e.g. 360 and 1161 tissues in Theiler stage (TS) 14 (E9) and TS22 (E13.5) embryos). DMDA will be extended to include further lineage and other data when it becomes available. The database can be interactively accessed over the internet using either a Java or a non-Java WWW browser at http://genex.hgu.mrc.ac.uk/. Copyright 1998 Elsevier Science Ireland Ltd. All rights reserved

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Mesh:

Year:  1998        PMID: 9651497     DOI: 10.1016/s0925-4773(98)00069-0

Source DB:  PubMed          Journal:  Mech Dev        ISSN: 0925-4773            Impact factor:   1.882


  60 in total

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Authors:  David P Hill; Judith A Blake; Joel E Richardson; Martin Ringwald
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  GenePaint.org: an atlas of gene expression patterns in the mouse embryo.

Authors:  Axel Visel; Christina Thaller; Gregor Eichele
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Oriented cell motility and division underlie early limb bud morphogenesis.

Authors:  Laurie A Wyngaarden; Kevin M Vogeli; Brian G Ciruna; Mathew Wells; Anna-Katerina Hadjantonakis; Sevan Hopyan
Journal:  Development       Date:  2010-06-16       Impact factor: 6.868

4.  GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group.

Authors:  M Ringwald; J T Eppig; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  LONI visualization environment.

Authors:  Ivo D Dinov; Daniel Valentino; Bae Cheol Shin; Fotios Konstantinidis; Guogang Hu; Allan MacKenzie-Graham; Erh-Fang Lee; David Shattuck; Jeff Ma; Craig Schwartz; Arthur W Toga
Journal:  J Digit Imaging       Date:  2006-06       Impact factor: 4.056

Review 6.  Enhancer identification through comparative genomics.

Authors:  Axel Visel; James Bristow; Len A Pennacchio
Journal:  Semin Cell Dev Biol       Date:  2007-01-05       Impact factor: 7.727

7.  A high-resolution anatomical rat atlas.

Authors:  Xueling Bai; Li Yu; Qian Liu; Jie Zhang; Anan Li; Dao Han; Qingming Luo; Hui Gong
Journal:  J Anat       Date:  2006-11       Impact factor: 2.610

8.  Multimodal, multidimensional models of mouse brain.

Authors:  Allan J Mackenzie-Graham; Erh-Fang Lee; Ivo D Dinov; Heng Yuan; Russell E Jacobs; Arthur W Toga
Journal:  Epilepsia       Date:  2007       Impact factor: 5.864

9.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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