Literature DB >> 9631663

Underground metabolism.

R D'Ari1, J Casadesús.   

Abstract

All enzymes are able to use alternative substrates. When these are naturally occurring metabolites, an 'underground reaction' takes place. Examples are presented in which underground metabolism of this sort produces an observable phenotype. Although biological processes can be remarkably accurate, evolution has selected error rates far from perfect. It is suggested here that a certain level of metabolic inaccuracy, in addition to saving energy, may also confer an evolutionary advantage, for example by providing metabolic plasticity. Since underground reactions are unpredictable from DNA sequence data, caution is in order when interpreting correlations between genetic disorders and pathological syndromes.

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Year:  1998        PMID: 9631663     DOI: 10.1002/(SICI)1521-1878(199802)20:2<181::AID-BIES10>3.0.CO;2-0

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  53 in total

1.  Messy biology and the origins of evolutionary innovations.

Authors:  Dan S Tawfik
Journal:  Nat Chem Biol       Date:  2010-10       Impact factor: 15.040

2.  Ohno's dilemma: evolution of new genes under continuous selection.

Authors:  Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

Review 3.  Protein promiscuity and its implications for biotechnology.

Authors:  Irene Nobeli; Angelo D Favia; Janet M Thornton
Journal:  Nat Biotechnol       Date:  2009-02       Impact factor: 54.908

Review 4.  Rethinking glycolysis: on the biochemical logic of metabolic pathways.

Authors:  Arren Bar-Even; Avi Flamholz; Elad Noor; Ron Milo
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

5.  Substrate ambiguous enzymes within the Escherichia coli proteome offer different evolutionary solutions to the same problem.

Authors:  Sylvia Hsu-Chen Yip; Ichiro Matsumura
Journal:  Mol Biol Evol       Date:  2013-05-31       Impact factor: 16.240

Review 6.  Systems-biology approaches for predicting genomic evolution.

Authors:  Balázs Papp; Richard A Notebaart; Csaba Pál
Journal:  Nat Rev Genet       Date:  2011-08-02       Impact factor: 53.242

7.  Model-driven discovery of underground metabolic functions in Escherichia coli.

Authors:  Gabriela I Guzmán; José Utrilla; Sergey Nurk; Elizabeth Brunk; Jonathan M Monk; Ali Ebrahim; Bernhard O Palsson; Adam M Feist
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-06       Impact factor: 11.205

8.  Higher gene duplicabilities for metabolic proteins than for nonmetabolic proteins in yeast and E. coli.

Authors:  Elizabeth Marland; Anuphap Prachumwat; Natalia Maltsev; Zhenglong Gu; Wen-Hsiung Li
Journal:  J Mol Evol       Date:  2004-12       Impact factor: 2.395

Review 9.  How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation.

Authors:  Margaret E Glasner; Dat P Truong; Benjamin C Morse
Journal:  FEBS J       Date:  2020-01-10       Impact factor: 5.542

10.  Alarmones as Vestiges of a Bygone RNA World.

Authors:  Ricardo Hernández-Morales; Arturo Becerra; Antonio Lazcano
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

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