Literature DB >> 9611246

Non-enzymatic, template-directed ligation of 2'-5' oligoribonucleotides. Joining of a template and a ligator strand.

H Sawai1, S Totsuka, K Yamamoto, H Ozaki.   

Abstract

Decauridylate containing exclusively a 2'-5' phospho-diester bond ([2'-5']U10) served as a template for the synthesis of oligoadenylates [oligo(A)s] from the 5'-phosphorimidazolide of 2'-5' diadenylate (ImpA-2'p5'A). Joining of [2'-5']U10and ImpA2'p5'A also took place in substantial amounts to yield long-chain oligoribonucleotides in the template-directed reaction. An unusual CD spectrum ascribed to helix formation between [2'-5']U10and [2'-5'](pA)2was observed under the same conditions as that of the template-directed reaction. The 3'-5' linked decauridylate ([3'-5']U10) also promoted the template-directed synthesis of oligo(A)s from ImpA2'p5'A, but more slowly compared with [2'-5']U10. The results indicate that short-chain RNA oligomers with a 2'-5' phosphodiester bond could lead to longer oligoribonucleotides by template-directed chain elongation.

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Year:  1998        PMID: 9611246      PMCID: PMC147642          DOI: 10.1093/nar/26.12.2995

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Unnatural selection in chemical systems.

Authors:  L E Orgel
Journal:  Acc Chem Res       Date:  1995-03       Impact factor: 22.384

2.  Hydrolytic stability of helical RNA: a selective advantage for the natural 3',5'-bond.

Authors:  D A Usher; A H McHale
Journal:  Proc Natl Acad Sci U S A       Date:  1976-04       Impact factor: 11.205

3.  Comparative studies of duplex and triplex formation of 2'-5' and 3'-5' linked oligoribonucleotides.

Authors:  H Sawai; J Seki; H Ozaki
Journal:  J Biomol Struct Dyn       Date:  1996-06

4.  Synthesis of RNA oligomers on heterogeneous templates.

Authors:  G Ertem; J P Ferris
Journal:  Nature       Date:  1996-01-18       Impact factor: 49.962

5.  Montmorillonite catalysis of RNA oligomer formation in aqueous solution. A model for the prebiotic formation of RNA.

Authors:  J P Ferris; G Ertem
Journal:  J Am Chem Soc       Date:  1993       Impact factor: 15.419

6.  Template-directed synthesis using the heterogeneous templates produced by montmorillonite catalysis. A possible bridge between the prebiotic and RNA worlds.

Authors:  G Ertem; J P Ferris
Journal:  J Am Chem Soc       Date:  1997-08-06       Impact factor: 15.419

7.  Conformational and stacking properties of 3'-5' and 2'-5' linked oligoribonucleotides studied by CD.

Authors:  H Sawai; K Kuroda; J Seki; H Ozaki
Journal:  Biopolymers       Date:  1996-08       Impact factor: 2.505

8.  Kinetic and mechanistic analysis of nonenzymatic, template-directed oligoribonucleotide ligation.

Authors:  R Rohatgi; D P Bartel; J W Szostak
Journal:  J Am Chem Soc       Date:  1996-04-10       Impact factor: 15.419

9.  Kinetic and mechanistic analysis of dinucleotide and oligonucleotide formation from the 5'-phosphorimidazolide of adenosine on Na(+)-montmorillonite.

Authors:  K Kawamura; J P Ferris
Journal:  J Am Chem Soc       Date:  1994       Impact factor: 15.419

10.  Nonenzymatic, template-directed ligation of oligoribonucleotides is highly regioselective for the formation of 3'-5' phosphodiester bonds.

Authors:  R Rohatgi; D P Bartel; J W Szostak
Journal:  J Am Chem Soc       Date:  1996-04-10       Impact factor: 15.419

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  6 in total

1.  Emergence of a dual-catalytic RNA with metal-specific cleavage and ligase activities: the spandrels of RNA evolution.

Authors:  L F Landweber; I D Pokrovskaya
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-05       Impact factor: 11.205

2.  Intercalation as a means to suppress cyclization and promote polymerization of base-pairing oligonucleotides in a prebiotic world.

Authors:  Eric D Horowitz; Aaron E Engelhart; Michael C Chen; Kaycee A Quarles; Michael W Smith; David G Lynn; Nicholas V Hud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-08       Impact factor: 11.205

3.  Nonenzymatic template-directed condensation of short-chained oligouridylates on a poly(A) template.

Authors:  H Sawai; M Wada
Journal:  Orig Life Evol Biosph       Date:  2000-12       Impact factor: 1.950

4.  Oligomerization of activated D- and L-guanosine mononucleotides on templates containing D- and L-deoxycytidylate residues.

Authors:  I A Kozlov; S Pitsch; L E Orgel
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

5.  Generation of long RNA chains in water.

Authors:  Giovanna Costanzo; Samanta Pino; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

Review 6.  Open questions in origin of life: experimental studies on the origin of nucleic acids and proteins with specific and functional sequences by a chemical synthetic biology approach.

Authors:  Katarzyna Adamala; Fabrizio Anella; Rafal Wieczorek; Pasquale Stano; Cristiano Chiarabelli; Pier Luigi Luisi
Journal:  Comput Struct Biotechnol J       Date:  2014-02-23       Impact factor: 7.271

  6 in total

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